Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45890 379 / 1e-131 SAG12 senescence-associated gene 12 (.1) AT5G50260 349 / 1e-119 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT3G19390 347 / 1e-117 Granulin repeat cysteine protease family protein (.1) AT3G48340 337 / 1e-114 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT2G27420 334 / 9e-114 Cysteine proteinases superfamily protein (.1) AT1G20850 333 / 3e-113 XCP2 xylem cysteine peptidase 2 (.1) AT3G49340 332 / 5e-113 Cysteine proteinases superfamily protein (.1) AT3G19400 332 / 6e-113 Cysteine proteinases superfamily protein (.1.2) AT5G43060 333 / 4e-112 Granulin repeat cysteine protease family protein (.1) AT4G35350 329 / 7e-112 XCP1 xylem cysteine peptidase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029649 [exp] 636 / 0 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1) Lus10029658 [exp] 631 / 0 AT5G45890 383 / 4e-133 senescence-associated gene 12 (.1) Lus10042691 [exp] 479 / 1e-172 AT5G50260 321 / 5e-110 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10006542 [exp] 431 / 4e-152 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10026362 [exp] 430 / 7e-152 AT5G45890 396 / 2e-138 senescence-associated gene 12 (.1) Lus10003275 [exp] 428 / 9e-151 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10032406 [exp] 427 / 1e-150 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10020730 [exp] 427 / 3e-150 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10020723 [exp] 426 / 4e-150 AT5G45890 398 / 3e-139 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G064900 [exp] 454 / 3e-161 AT5G45890 401 / 3e-140 senescence-associated gene 12 (.1) Potri.013G126100 [exp] 429 / 3e-151 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1) Potri.013G118400 [exp] 429 / 4e-151 AT5G45890 378 / 2e-131 senescence-associated gene 12 (.1) Potri.013G118200 [exp] 423 / 2e-149 AT5G45890 387 / 2e-135 senescence-associated gene 12 (.1) Potri.005G088600 [exp] 412 / 4e-144 AT5G45890 406 / 8e-142 senescence-associated gene 12 (.1) Potri.005G089100 [exp] 410 / 5e-144 AT5G45890 405 / 1e-141 senescence-associated gene 12 (.1) Potri.007G075300 [exp] 408 / 7e-143 AT5G45890 406 / 6e-142 senescence-associated gene 12 (.1) Potri.007G076000 [exp] 407 / 1e-142 AT5G45890 407 / 2e-142 senescence-associated gene 12 (.1) Potri.007G076100 [exp] 407 / 2e-142 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075900 [exp] 407 / 2e-142 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10042693 pacid=23181723 polypeptide=Lus10042693 locus=Lus10042693.g ID=Lus10042693.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTTCTTCCTCAGGTATTCCGCACAATCTGATGTTAGTGTTGGTGTTGCTGATGGGGATCTATGCATATGGAGCCTTCTCTGCATCAGCGA CTCGTCCCACCATGAACGAAAGGTTTGAAGCATGGATCGTGAAGAATGGACGTATCTACGAAGATGCTGGAGAGAAGACCAGGCGATTCACGATCTTTAA GAAGAATGTTGGGTTCGTTAACCACTTCAACAAGTTTGGGAACAAAACTTACAAGTTAACTGTGAATCAATACGCAGACTTGACCAACAAGGAATTCATG GCTGCCAAAACTGGATACAAGAAGACGGTTTCCGATCTCGGATCTTCGTTGTCGTTTAAGTACCAGAATGCGACTTCAGTGCCAGACACCATGGATTGGA GAACTAAAGGAGCTGTCAATACCATTAAAGATCAAGGCCAATGTGGAGGGTGTTGGGCATTCTCTGCTGTGGCGGCAGTGGAAGGACTAATGAAGATCTC AACAGGGATGTTGGTATCGCTTTCGGAGCAAGAACTGATCGACTGCGACAGAACGAGTAACGACCAAGGATGCAACGGAGGATTCATGGACGACGCTTTT CAATATGTGAAGAGCAAAGGTCTCACAACTGAATCCAACTACCCTTACACGGCAGCAGATGGAACTTGCAATGCAGCTAAGACAAACCCTTCTTCGGCCA AGATCAACGGTTACGAGGATGTACCTGCCAACGATGAGAAATCGTTGCTTAAAGCTGCGGCTAACCAGCCCATCTCTGTGGCCATTGATGCCAGTGGCTC TGCTTTCCAGTTCTACTCGAGTGGAGTGTTCACCGGAGACTGTGGCACGGATTTGGATCATGGTGTGGCTGTCGTAGGGTATGGAACGAGTGTCGATGGT TTGAAGTACTGGCTGGTGAGGAACTCGTGGGGGACGAGCTGGGGAGATGGAGGGTACATCAAGATGCAGAGAGATGTTGGTGCTAAAGAAGGGCTTTGTG GCATTGCTATGTCTGCTTCATATCCTACTTCTTAA
AA sequence Show only first row Show all	>Lus10042693 pacid=23181723 polypeptide=Lus10042693 locus=Lus10042693.g ID=Lus10042693.BGIv1.0 annot-version=v1.0 MASSSSSGIPHNLMLVLVLLMGIYAYGAFSASATRPTMNERFEAWIVKNGRIYEDAGEKTRRFTIFKKNVGFVNHFNKFGNKTYKLTVNQYADLTNKEFM AAKTGYKKTVSDLGSSLSFKYQNATSVPDTMDWRTKGAVNTIKDQGQCGGCWAFSAVAAVEGLMKISTGMLVSLSEQELIDCDRTSNDQGCNGGFMDDAF QYVKSKGLTTESNYPYTAADGTCNAAKTNPSSAKINGYEDVPANDEKSLLKAAANQPISVAIDASGSAFQFYSSGVFTGDCGTDLDHGVAVVGYGTSVDG LKYWLVRNSWGTSWGDGGYIKMQRDVGAKEGLCGIAMSASYPTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10042693 [exp]	0	1
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10024577 [exp]	3.2	0.8049
AT4G23700		ATCHX17	cation/H+ exchanger 17, cation...		Lus10024716 [exp]	7.2	0.7862
					Lus10014003 [exp]	8.5	0.7766
					Lus10014735 [exp]	9.4	0.6669
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10000405 [exp]	10.4	0.7082
AT1G24110			Peroxidase superfamily protein...		Lus10004234 [exp]	13.9	0.7696
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10025196 [exp]	14.1	0.7128
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10039166 [exp]	15.7	0.6382
AT1G60970			SNARE-like superfamily protein...		Lus10015263 [exp]	20.7	0.5723
AT2G21990			Protein of unknown function, D...		Lus10035847 [exp]	21.6	0.6981

Compare expression of checked genes

Lus10042693 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.