Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G36390 209 / 5e-66 Co-chaperone GrpE family protein (.1.2) AT5G17710 208 / 8e-65 EMB1241 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) AT4G26780 59 / 1e-09 MGE2, AR192 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) AT5G55200 47 / 9e-06 MGE1 mitochondrial GrpE 1, Co-chaperone GrpE family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029654 [exp] 538 / 0 AT5G17710 215 / 2e-67 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) Lus10028034 [exp] 362 / 9e-125 AT5G17710 222 / 3e-70 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) Lus10003741 [exp] 360 / 9e-124 AT5G17710 222 / 3e-70 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) Lus10024760 [exp] 253 / 1e-82 AT1G36390 209 / 2e-66 Co-chaperone GrpE family protein (.1.2) Lus10043180 [exp] 55 / 4e-08 AT4G26780 281 / 2e-93 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) Lus10032565 [exp] 54 / 8e-08 AT4G26780 299 / 1e-100 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) Lus10000783 [exp] 53 / 2e-07 AT5G55220 336 / 5e-109 trigger factor type chaperone family protein (.1) Lus10010247 [exp] 50 / 7e-07 AT5G55200 270 / 7e-91 mitochondrial GrpE 1, Co-chaperone GrpE family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G090000 [exp] 290 / 9e-97 AT1G36390 233 / 8e-76 Co-chaperone GrpE family protein (.1.2) Potri.005G171201 [exp] 253 / 2e-82 AT1G36390 213 / 7e-68 Co-chaperone GrpE family protein (.1.2) Potri.013G067900 [exp] 199 / 3e-61 AT5G17710 313 / 9e-106 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) Potri.015G065800 [exp] 57 / 7e-09 AT4G26780 291 / 3e-97 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) Potri.011G089000 [exp] 52 / 3e-07 AT4G26780 284 / 1e-94 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01025 [flax] [poplar] GrpE GrpE
Representative CDS sequence Show only first row Show all	>Lus10042696 pacid=23181829 polypeptide=Lus10042696 locus=Lus10042696.g ID=Lus10042696.BGIv1.0 annot-version=v1.0 ATGGCGATGCCTCTCTCCAATCCCACACTCATCTCCTCTCATCCTCCTCCTAGCCTCTCTGCACACAATACCCTAAACTCTACCTCCTCACCCACCACTC CTTTATTCCTCCTCTCCTTCCTCCCACACAAACCTTTCCATGGATTGAAGTTGACTTCCGTTCCTGCTCTACCACCGTTACGCAGCAGCAACAAGTACAT CCATGGCTCCCGTTGTTTCCTTCCTCGTTGCGCACCCCACCAAGCTGCCTCAGCCGATTCCGCTACTCTTATAAATGAAGAAGAGGGTAATCCGCAGAAT GATGAAGTAAACGATACAGAAAAGGAAGAAGAAGAAGACAATGCGGCAAGTGAAACCAAGGAGCAAGGAGAACCTGAACAATCAACTTCACAGAACGACT CAGACTTGAAGAGTCTTATCGCCAGTTTTCGAGAAGCTATACTATCTGGTGATCAGGATGCTGCTTCCAAGATCGAGGCTAAGATCAACGACATAGAAGT AAATGTCGACAGCGAACTCATACAGAAGGTTTCAGCTTTATCAGCGGAGGTAACATCGGGAAGAGACCGGTACGTTCGCCTTCAAGCAGATTTTGAAAAT TTTAGGAGAAGGTCCGAAACCGAGAGGCTGAACATCAGGAGCGATGCACAAGGAGCAGTGATTGAGAGCCTACTGCCCATGGTCGACAGTTTCGAGAGGG CCAAGCAGCAATTGAAACCAGAAACCGACAAGGAGAAGCAAATAGACGCAAGTTACCAGGGTATATACAAGCAGTTTTTGGAGATCATGAAAGGTTTGCA GGTGACTGCCGTACCAACGGTTGGGCATCCTTTTGATCCTTCGGTGCATGAAGCAATTGCGAGGGAGCAATCTGAAGAGTATGAGGAAGGAATTGTAGTA CAGGAGTTCAGGCCCGGGTTCTGCATTGGAGACCGGCTAATAAGACCAGCTATGGTTAAAGTCTCGGAAGGGCCTGGTCATAAAGTAAGTGAGGAAGCTG CTACTGCTGCTGGTCCTGAAAAGGAGCAAGAAGCTGCTACAGAAGAGTAA
AA sequence Show only first row Show all	>Lus10042696 pacid=23181829 polypeptide=Lus10042696 locus=Lus10042696.g ID=Lus10042696.BGIv1.0 annot-version=v1.0 MAMPLSNPTLISSHPPPSLSAHNTLNSTSSPTTPLFLLSFLPHKPFHGLKLTSVPALPPLRSSNKYIHGSRCFLPRCAPHQAASADSATLINEEEGNPQN DEVNDTEKEEEEDNAASETKEQGEPEQSTSQNDSDLKSLIASFREAILSGDQDAASKIEAKINDIEVNVDSELIQKVSALSAEVTSGRDRYVRLQADFEN FRRRSETERLNIRSDAQGAVIESLLPMVDSFERAKQQLKPETDKEKQIDASYQGIYKQFLEIMKGLQVTAVPTVGHPFDPSVHEAIAREQSEEYEEGIVV QEFRPGFCIGDRLIRPAMVKVSEGPGHKVSEEAATAAGPEKEQEAATEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G36390			Co-chaperone GrpE family prote...		Lus10042696 [exp]	0	1
AT3G10080			RmlC-like cupins superfamily p...		Lus10020631 [exp]	1.4	0.9156
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10032873 [exp]	1.7	0.8397
AT1G69320		CLE10	CLAVATA3/ESR-RELATED 10 (.1)		Lus10036960 [exp]	4.6	0.8203
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10002587 [exp]	4.7	0.8466
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005015 [exp]	6.6	0.7187
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10017350 [exp]	6.9	0.8211
					Lus10006808 [exp]	7.7	0.8312
AT1G55800			Domain of unknown function (DU...		Lus10016346 [exp]	8.5	0.8178
AT5G19020		MEF18	mitochondrial editing factor ...		Lus10019079 [exp]	9.2	0.7430
AT1G73965		CLE13	CLAVATA3/ESR-RELATED 13 (.1)		Lus10037107 [exp]	9.3	0.6909

Compare expression of checked genes

Lus10042696 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.