Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39360 418 / 6e-150 EDL2 EID1-like 2 (.1) AT5G15440 407 / 4e-145 EDL1 EID1-like 1 (.1) AT3G63060 194 / 2e-61 EDL3 EID1-like 3 (.1) AT4G02440 44 / 5e-05 EID1 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029662 [exp] 483 / 7e-176 AT5G39360 423 / 4e-152 EID1-like 2 (.1) Lus10025639 [exp] 465 / 2e-168 AT5G39360 429 / 2e-154 EID1-like 2 (.1) Lus10018196 [exp] 400 / 3e-143 AT5G39360 364 / 6e-129 EID1-like 2 (.1) Lus10028001 [exp] 199 / 5e-63 AT3G63060 312 / 6e-107 EID1-like 3 (.1) Lus10000659 [exp] 151 / 3e-45 AT3G63060 212 / 1e-68 EID1-like 3 (.1) Lus10007870 [exp] 52 / 1e-07 AT4G02440 399 / 9e-140 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1) Lus10030373 [exp] 48 / 2e-06 AT4G02440 407 / 8e-143 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G125000 [exp] 461 / 8e-167 AT5G39360 418 / 4e-150 EID1-like 2 (.1) Potri.017G090300 [exp] 448 / 7e-162 AT5G39360 415 / 1e-148 EID1-like 2 (.1) Potri.002G205150 [exp] 60 / 3e-10 AT4G02440 371 / 9e-129 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1) Potri.014G130000 [exp] 57 / 2e-09 AT4G02440 370 / 2e-128 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042699 pacid=23181932 polypeptide=Lus10042699 locus=Lus10042699.g ID=Lus10042699.BGIv1.0 annot-version=v1.0 ATGATATTAACAAAGCAATATCGATGTATACACTCTTCGAGCTGTCAATGCACAAAAGGTCATCTAAGTGAAGATGTGATATTCTTAGTCTTTCAACAGC TGAACTGGAACCCAAAGTTGATTGCCGCTCTATCATGTACATGCAAGTGGTTTGATGATCTTTGCAAGCGAGTATTGTGGAAGGAGTTCTGCAAGACAAG AGCTCCAAAGATGATGGTTGATCTACAATCCAGTGGAAGTCATAGTGTTGATGGAAACTGGAGGGCGCTCGGGAAGTTGCTTATATACTGTTCAGGATGT CCCAAGGGTGGCTTATTCAATAGCATTAATGTGCCTGGTCATTTCGTTTACAGGACTCGGTTTTCAAGAACATCGGGCAAAAGCTTTCTCTTGCCTCAAT GTAGAACAGATGTGTTATATGTCTCTGACCCATGTGAACATCTAGACCAAGGGGATGAAGGGGATATAGGATTTTTTCGAGGAATATTCAAGTCATTCCC CATGTCAAAAGTAAGGAAGCTTCTGATTCAAAGAACAGCACCACTGCACCCTACACATGTATGTCCATATTGCAAGGCAAAGCTTTGGGACATGCTGCAA GCAAAGATGATTCCACAAAGTGCCAGCTGCAGATTGGGTTCTTATGAGGATTGTATCGAGTATTACGTGTGCCTCAATGGGCATATGCTAGGAATCTGCA CTCTCTTACCATTGTCAGAGTCTGAAGAGGTGTCTGAAGTTGACTGA
AA sequence Show only first row Show all	>Lus10042699 pacid=23181932 polypeptide=Lus10042699 locus=Lus10042699.g ID=Lus10042699.BGIv1.0 annot-version=v1.0 MILTKQYRCIHSSSCQCTKGHLSEDVIFLVFQQLNWNPKLIAALSCTCKWFDDLCKRVLWKEFCKTRAPKMMVDLQSSGSHSVDGNWRALGKLLIYCSGC PKGGLFNSINVPGHFVYRTRFSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGDEGDIGFFRGIFKSFPMSKVRKLLIQRTAPLHPTHVCPYCKAKLWDMLQ AKMIPQSASCRLGSYEDCIEYYVCLNGHMLGICTLLPLSESEEVSEVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39360		EDL2	EID1-like 2 (.1)		Lus10042699 [exp]	0	1
AT5G41120			Esterase/lipase/thioesterase f...		Lus10012560 [exp]	1.4	0.8621
AT5G16690		ORC3, ATORC3	origin recognition complex sub...		Lus10034596 [exp]	5.1	0.8172
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10022735 [exp]	5.2	0.7941
AT3G07890			Ypt/Rab-GAP domain of gyp1p su...		Lus10006410 [exp]	10.0	0.7848
AT1G73390			Endosomal targeting BRO1-like ...		Lus10026368 [exp]	12.4	0.7648
AT2G32900		ATZW10	centromere/kinetochore protein...		Lus10029956 [exp]	13.8	0.7318
AT3G61050		AtCLB, NTMCTYPE...	calcium-dependent lipid-bindin...		Lus10041396 [exp]	19.6	0.7627
AT2G30350			Excinuclease ABC, C subunit, N...		Lus10024187 [exp]	24.5	0.6921
AT3G52950			CBS / octicosapeptide/Phox/Bem...		Lus10025698 [exp]	24.8	0.7578
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10027507 [exp]	25.1	0.7350

Compare expression of checked genes

Lus10042699 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.