Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44760 171 / 6e-54 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT5G17390 65 / 1e-12 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT2G03720 64 / 1e-12 MRH6 morphogenesis of root hair 6, Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT1G69080 64 / 1e-12 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT3G03290 62 / 1e-11 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029664 [exp] 276 / 2e-95 AT1G44760 236 / 2e-79 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10025644 [exp] 171 / 5e-54 AT1G44760 211 / 1e-69 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10018190 [exp] 164 / 8e-52 AT1G44760 197 / 1e-64 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10019173 [exp] 78 / 1e-17 AT1G69080 192 / 2e-61 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10007982 [exp] 61 / 4e-11 AT5G17390 149 / 1e-43 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10034661 [exp] 59 / 2e-10 AT5G17390 160 / 3e-48 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10036814 [exp] 52 / 4e-09 AT1G69080 109 / 7e-32 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10023716 [exp] 41 / 9e-05 AT4G13450 136 / 2e-41 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10043152 [exp] 42 / 0.0001 AT4G13450 178 / 4e-56 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G177100 [exp] 174 / 6e-55 AT1G44760 226 / 3e-75 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.002G084600 [exp] 164 / 5e-51 AT1G44760 200 / 5e-65 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.010G140200 [exp] 76 / 1e-16 AT1G69080 202 / 3e-65 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.008G109000 [exp] 71 / 5e-15 AT1G69080 196 / 6e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.T170801 [exp] 70 / 2e-14 AT1G69080 196 / 3e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.015G060700 [exp] 69 / 5e-14 AT3G03290 198 / 2e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10042701 pacid=23181722 polypeptide=Lus10042701 locus=Lus10042701.g ID=Lus10042701.BGIv1.0 annot-version=v1.0 ATGCAGAGTCCAGGAGGAGCTTCGTTTCTCAGGCAGCTGAGTGTTGGTGGAGGGATGGAAGGTTACAACAACTCCTACTACAATACCCAAATGGAAGATC ACTTCAATGGCGGCTTCAATGGTGGGGGAGGGGGATTGGTGATGAGGAAGCGAGTGATGGTGGTTGTAGATCAGAGCTCTCACACAAAGCATGCCATGAT TTGGGCACTTACTCATGTAGTCAACAAGTCTGATTTGTTGACCTTGCTTCACATCATCCCTCCTTCCTCCTCTTCTTCTCATTCTTCTCCTTCCCTTTTG GCCAACTCTCTCGGTTCCCTCTGCAAGGCCTGCAAACCGGAGGTGGAAGTGGAGGCGTTGGTGGTGCAAGGGCCAAAGTTTGCAACAGTGATGAGTCAAG TGAAGAAGCTGGATGTGGGCGTGTTAGTACTTGGTCAGAAGAAGTCTTCTTCCCTTTTCAGCTGCCTGTGTGGGAGAAGCAGCAGCGAAGAGTTTGTAGA GAAGTGCATCAAAAGTTTGGAGTGCATGACAGTAGGGGTGAGGAGGCAGAACAAAGGGATGAGTGGTTATCTCATCAGCACAAAATGGCAGAAGAACTTC TGGCTCTTAGCTTAG
AA sequence Show only first row Show all	>Lus10042701 pacid=23181722 polypeptide=Lus10042701 locus=Lus10042701.g ID=Lus10042701.BGIv1.0 annot-version=v1.0 MQSPGGASFLRQLSVGGGMEGYNNSYYNTQMEDHFNGGFNGGGGGLVMRKRVMVVVDQSSHTKHAMIWALTHVVNKSDLLTLLHIIPPSSSSSHSSPSLL ANSLGSLCKACKPEVEVEALVVQGPKFATVMSQVKKLDVGVLVLGQKKSSSLFSCLCGRSSSEEFVEKCIKSLECMTVGVRRQNKGMSGYLISTKWQKNF WLLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44760			Adenine nucleotide alpha hydro...		Lus10042701 [exp]	0	1
					Lus10016534 [exp]	3.6	0.9801
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Lus10038002 [exp]	5.7	0.9785
AT4G01290			unknown protein		Lus10039283 [exp]	7.1	0.9752
AT1G65870			Disease resistance-responsive ...		Lus10016231 [exp]	7.3	0.9791
AT5G19730			Pectin lyase-like superfamily ...		Lus10011132 [exp]	7.5	0.9523
AT3G05600			alpha/beta-Hydrolases superfam...		Lus10029878 [exp]	11.1	0.9761
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10010693 [exp]	13.6	0.9749
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10009457 [exp]	14.8	0.9725
					Lus10007549 [exp]	15.2	0.9744
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10030473 [exp]	15.3	0.9617

Compare expression of checked genes

Lus10042701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.