Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27460 270 / 3e-87 Cystathionine beta-synthase (CBS) family protein (.1) AT5G53750 268 / 2e-86 CBS domain-containing protein (.1) AT1G65320 100 / 3e-23 Cystathionine beta-synthase (CBS) family protein (.1) AT1G80090 64 / 7e-11 AtPV42b Cystathionine beta-synthase (CBS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029665 [exp] 682 / 0 AT5G53750 283 / 2e-92 CBS domain-containing protein (.1) Lus10025651 [exp] 512 / 0 AT4G27460 301 / 2e-99 Cystathionine beta-synthase (CBS) family protein (.1) Lus10018183 [exp] 508 / 0 AT4G27460 298 / 3e-98 Cystathionine beta-synthase (CBS) family protein (.1) Lus10037535 [exp] 114 / 3e-28 AT1G65320 483 / 2e-170 Cystathionine beta-synthase (CBS) family protein (.1) Lus10011457 [exp] 112 / 1e-27 AT1G65320 485 / 2e-171 Cystathionine beta-synthase (CBS) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G041000 [exp] 429 / 1e-149 AT5G53750 295 / 6e-97 CBS domain-containing protein (.1) Potri.011G050500 [exp] 409 / 7e-142 AT5G53750 261 / 1e-83 CBS domain-containing protein (.1) Potri.001G402900 [exp] 317 / 9e-106 AT5G53750 372 / 7e-127 CBS domain-containing protein (.1) Potri.011G122000 [exp] 310 / 1e-102 AT5G53750 355 / 6e-120 CBS domain-containing protein (.1) Potri.013G087100 [exp] 106 / 3e-25 AT1G65320 521 / 0.0 Cystathionine beta-synthase (CBS) family protein (.1) Potri.019G052650 [exp] 96 / 1e-21 AT1G65320 516 / 0.0 Cystathionine beta-synthase (CBS) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Lus10042702 pacid=23181963 polypeptide=Lus10042702 locus=Lus10042702.g ID=Lus10042702.BGIv1.0 annot-version=v1.0 ATGGCAGATCGTTTGTTAGCTCGGGAGGTATCCGACTTATGTCTAGGCAAGCCCGCTCTCACTTCCCTCCCCGTCTCCGCCACCGTCGCCGACGCCTTGT CCGTCCTCCGTCGCTCCGCTGACTCCTCTCCCTACCTCAGCGTCTGGAGCTGCGATCACCGCCCTCCCCGATCCAAACCCCTCAATGTAGGCGGCCACAC CGGATGCCGTTGCATCGGTAAGATCTGTATGGTTGACGTCATCTGTTTCCTCGCTAGAGAAGACAATTTCAAGAACATTGCAATCGCGCTTCACAGATCC CTCTCGTTCCTCCTCGTCGATTTCCCATCCGGCATCGTCCGCCACTTAGAGCCTCACGCCAATCTGTTGGAAGCGGTAGATCTGATTGCGGAAGGAGCGC AGAATCTGGTGATTCCGATTCACAATCCTTTCTCGTCGAGGAAGAAGCTGTCTCAGATCCAGAGCTCGACGACGCTGCACAGCTACAATCGGGAGTATTG CTGGCTGACGCAGGAGGACATTATCCGTTACCTCCTCAATTGCATCGGATTCTTCTCTCCTTTACCTAGTCAATCCATCGATGCTCTGAACATCATCGAC AGTGAATCGATCGTAGCCGTCCGTTACGACGACCCTGCCTCTTCAGCTCTGCCGCTGATCTCTAAATCTCTGGTGAATCAGACCTCCGTGGCGATCCTGG ACGAGGAAGGTAGATTAGTCGGCGAGATCTCTCCCGCGGCGTTGAATTGCTGCGACGAGTCCGCAGCGGCCGCGGTCGCCACACTTTCGGCAGGCGATCT GATGACGTACGTCGACTGCTTCGGTGATCTGCAGTTGGAGCTTGTGCGGATGGTGAAGGAAAGGCTGGAAGCGAAGAACTTTGAGGCGGCAGTGGAATTG GTAGTGGAGGAGGAGTATTTGGGGGTCTCGTCGGACGAGGAGGAGTTGTTGGGACGCAGAACGAGTGGGCATCGGCCGAAAGTGGGGAGGAACACGGAGG ATATAGTGTGCCATCGGTGGAGCTCGTTGGTGGCGGTGATGATCCAGATGCTGTCGCATCGGACGGGATACATTTGGGTGGTGGAAGACGACGGAGGTTT GGTCGGTATAGTGACGTACGCAGCTATGATCAAGGTTTTCCGGGAACGTGTGAAATCATTATAA
AA sequence Show only first row Show all	>Lus10042702 pacid=23181963 polypeptide=Lus10042702 locus=Lus10042702.g ID=Lus10042702.BGIv1.0 annot-version=v1.0 MADRLLAREVSDLCLGKPALTSLPVSATVADALSVLRRSADSSPYLSVWSCDHRPPRSKPLNVGGHTGCRCIGKICMVDVICFLAREDNFKNIAIALHRS LSFLLVDFPSGIVRHLEPHANLLEAVDLIAEGAQNLVIPIHNPFSSRKKLSQIQSSTTLHSYNREYCWLTQEDIIRYLLNCIGFFSPLPSQSIDALNIID SESIVAVRYDDPASSALPLISKSLVNQTSVAILDEEGRLVGEISPAALNCCDESAAAAVATLSAGDLMTYVDCFGDLQLELVRMVKERLEAKNFEAAVEL VVEEEYLGVSSDEEELLGRRTSGHRPKVGRNTEDIVCHRWSSLVAVMIQMLSHRTGYIWVVEDDGGLVGIVTYAAMIKVFRERVKSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53750			CBS domain-containing protein ...		Lus10042702 [exp]	0	1
AT3G02700			NC domain-containing protein-r...		Lus10010962 [exp]	1.7	0.9256
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10024585 [exp]	5.5	0.9002
AT5G53750			CBS domain-containing protein ...		Lus10029665 [exp]	5.5	0.8887
AT3G62470			Pentatricopeptide repeat (PPR)...		Lus10003461 [exp]	6.0	0.9016
AT1G21830			unknown protein		Lus10018177 [exp]	8.9	0.8958
AT1G22610			C2 calcium/lipid-binding plant...		Lus10009459 [exp]	9.6	0.9034
AT2G29550		TUB7	tubulin beta-7 chain (.1)		Lus10023348 [exp]	9.8	0.9034
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024586 [exp]	10.4	0.8953
AT3G52060			Core-2/I-branching beta-1,6-N-...		Lus10008954 [exp]	12.0	0.8983
AT3G24040			Core-2/I-branching beta-1,6-N-...		Lus10023687 [exp]	18.3	0.8714

Compare expression of checked genes

Lus10042702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.