Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36230 631 / 0 ARM repeat superfamily protein (.1) AT1G65220 608 / 0 ARM repeat superfamily protein (.1) AT2G34970 57 / 2e-08 Trimeric LpxA-like enzyme (.1) AT4G18300 56 / 2e-08 Trimeric LpxA-like enzyme (.1) AT3G02270 50 / 2e-06 Trimeric LpxA-like enzyme (.1) AT1G77840 47 / 2e-05 Translation initiation factor IF2/IF5 (.1) AT1G36730 46 / 3e-05 Translation initiation factor IF2/IF5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018182 [exp] 720 / 0 AT5G36230 623 / 0.0 ARM repeat superfamily protein (.1) Lus10029667 [exp] 415 / 6e-147 AT5G36230 320 / 1e-109 ARM repeat superfamily protein (.1) Lus10018991 [exp] 54 / 2e-07 AT2G34970 869 / 0.0 Trimeric LpxA-like enzyme (.1) Lus10004057 [exp] 54 / 2e-07 AT1G36730 505 / 4e-178 Translation initiation factor IF2/IF5 (.1) Lus10033841 [exp] 53 / 3e-07 AT2G34970 880 / 0.0 Trimeric LpxA-like enzyme (.1) Lus10002283 [exp] 51 / 8e-07 AT1G36730 505 / 6e-178 Translation initiation factor IF2/IF5 (.1) Lus10000448 [exp] 49 / 3e-06 AT1G36730 423 / 7e-147 Translation initiation factor IF2/IF5 (.1) Lus10010980 [exp] 47 / 8e-06 AT1G36730 184 / 2e-55 Translation initiation factor IF2/IF5 (.1) Lus10029666 [exp] 0 / 1 AT5G36230 246 / 5e-84 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G053600 [exp] 689 / 0 AT5G36230 694 / 0.0 ARM repeat superfamily protein (.1) Potri.013G085600 [exp] 685 / 0 AT5G36230 687 / 0.0 ARM repeat superfamily protein (.1) Potri.005G045200 [exp] 56 / 4e-08 AT2G34970 969 / 0.0 Trimeric LpxA-like enzyme (.1) Potri.017G122200 [exp] 48 / 7e-06 AT1G77840 456 / 1e-158 Translation initiation factor IF2/IF5 (.1) Potri.004G093600 [exp] 44 / 0.0001 AT1G77840 514 / 0.0 Translation initiation factor IF2/IF5 (.1) Potri.004G112200 [exp] 42 / 0.0008 AT1G77840 493 / 2e-173 Translation initiation factor IF2/IF5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF02020 [flax] [poplar] W2 eIF4-gamma/eIF5/eIF2-epsilon
Representative CDS sequence Show only first row Show all	>Lus10042703 pacid=23182066 polypeptide=Lus10042703 locus=Lus10042703.g ID=Lus10042703.BGIv1.0 annot-version=v1.0 ATGCCCGTCGTCGGATTCCTAAAGATCCGCGGCTCGAAGGAGAAACCCACTCTCGGTGGCACGCGGATTAAGACCCGCAAACGAAATATCACATCATCGC TGGACCCTGCAGCATTTGCTGATGCAGTGGTCCAGATTTATCTGGATAATGCTGGAGATTTGGTTGTTTTCACGGGAGGTCGTACTCAACCTGGAACAAC TAAACCTGACGAGGGGGAGCGACATCCTTATTCTTTCCTAGACTGTGAGCCCAAGCATGAAGCTATATTACCTTCTGTGATTTATGTACAGAAGATCTTA CGTCGGAGACCGTTTCTCATAAAGAACCTTGAAAATGTCATGCGGAGATTCCTGCAATCACTGGAACTCTGTGAAGAAAGTGAAAGGAAGAAACTGGCAA TTTTCTCAGCACTTGCATTCTCACAGAAACTATCAGGACTCCCACCGGAGTCTGTCTTGCAACCTTTGCTCAAGGATAATCTTGTGGCCAAAGGGATAGT TCTTGCATTTATAACAGACTTCTTTAAGGAGTATCTTGTTGACAACAGTCTTGATGACCTTATTTCCATCCTGAAGAGGGCCAAAATGGAGGATAACCTT CTGGATTATTTCCCTTCTTCCAAGCGCACTGCTGAAGCTTTTTCCGAACATTTCACCAAGGAAGGACTGCTTCAGTTGGTTGAATACAATGAGAAGAAAA TATTTGACGATAAGTTGAGGGAGATGAAGTCTGCTTTAACAACCTTGATTGCTGAGGAAACTGACCAAGAAGAGGTCTTGGATGTTGTCAAGCAACGAGT TGCCGATGCCAAACTGCCTGAAATTGAAGTTGTGCGGATTCTGTGGGATGTGTTGATGGATGCCGTTCAGTGGTCAGGGAAGAACCAGCAGCAGAATGCT AATTCAGCACTGCGTCAGGTGAAAACATGGGCGAAGCTGTTGAATACGTACTGCACGAGTGGGAAACTTGAGTTGGAACTGCTGTACAAAGTGCAGATGC AGTGTTATGAGGACACGAAGCTGATGAAACTGTTTCCTGATATAGTTAGGTCTTTGTATGATCAGGATGTGCTTGCCGAAGACACTATTCTTCATTGGTT CCGCAAGGGGACGAATCCAAAGGGCAGGCAAACATTTGTGAAGGCAATAGAGCCATTTGTTAACTGGCTGGAAGAGGCAGAGGAAGAGGAGTAA
AA sequence Show only first row Show all	>Lus10042703 pacid=23182066 polypeptide=Lus10042703 locus=Lus10042703.g ID=Lus10042703.BGIv1.0 annot-version=v1.0 MPVVGFLKIRGSKEKPTLGGTRIKTRKRNITSSLDPAAFADAVVQIYLDNAGDLVVFTGGRTQPGTTKPDEGERHPYSFLDCEPKHEAILPSVIYVQKIL RRRPFLIKNLENVMRRFLQSLELCEESERKKLAIFSALAFSQKLSGLPPESVLQPLLKDNLVAKGIVLAFITDFFKEYLVDNSLDDLISILKRAKMEDNL LDYFPSSKRTAEAFSEHFTKEGLLQLVEYNEKKIFDDKLREMKSALTTLIAEETDQEEVLDVVKQRVADAKLPEIEVVRILWDVLMDAVQWSGKNQQQNA NSALRQVKTWAKLLNTYCTSGKLELELLYKVQMQCYEDTKLMKLFPDIVRSLYDQDVLAEDTILHWFRKGTNPKGRQTFVKAIEPFVNWLEEAEEEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36230			ARM repeat superfamily protein...		Lus10042703 [exp]	0	1
AT5G36230			ARM repeat superfamily protein...		Lus10029667 [exp]	1.0	0.8627
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10003978 [exp]	4.2	0.8076
AT5G47630		MTACP3	mitochondrial acyl carrier pro...		Lus10000050 [exp]	6.0	0.7694
AT1G67785			unknown protein		Lus10018082 [exp]	10.6	0.7064
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10016486 [exp]	23.5	0.7482
AT5G66580			unknown protein		Lus10019659 [exp]	30.2	0.7205
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Lus10025738 [exp]	47.6	0.6923
AT5G62220		ATGT18	glycosyltransferase 18 (.1)		Lus10027386 [exp]	50.9	0.7464
AT2G04280			unknown protein		Lus10036415 [exp]	53.3	0.7358
AT4G31990		AAT3, ATAAT1, A...	ASPARTATE AMINOTRANSFERASE DEF...		Lus10001938 [exp]	53.6	0.7317

Compare expression of checked genes

Lus10042703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.