Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73700 187 / 2e-57 MATE efflux family protein (.1) AT2G34360 182 / 2e-55 MATE efflux family protein (.1) AT5G52450 182 / 3e-55 MATE efflux family protein (.1) AT1G71140 132 / 1e-36 MATE efflux family protein (.1) AT1G15170 131 / 3e-36 MATE efflux family protein (.1) AT2G04040 129 / 1e-35 ATDTX1 detoxification 1, MATE efflux family protein (.1) AT1G15150 129 / 2e-35 MATE efflux family protein (.1) AT1G15160 127 / 7e-35 MATE efflux family protein (.1) AT2G04100 127 / 1e-34 MATE efflux family protein (.1) AT1G15180 127 / 1e-34 MATE efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029668 [exp] 268 / 2e-89 AT5G52450 490 / 6e-172 MATE efflux family protein (.1) Lus10017998 [exp] 225 / 2e-71 AT5G52450 556 / 0.0 MATE efflux family protein (.1) Lus10041994 [exp] 214 / 1e-67 AT5G52450 608 / 0.0 MATE efflux family protein (.1) Lus10001318 [exp] 171 / 5e-51 AT5G52450 507 / 1e-177 MATE efflux family protein (.1) Lus10019492 [exp] 153 / 3e-44 AT5G52450 485 / 6e-169 MATE efflux family protein (.1) Lus10006979 [exp] 156 / 4e-44 AT1G13120 479 / 1e-157 embryo defective 1745 (.1) Lus10034966 [exp] 142 / 3e-40 AT3G23560 579 / 0.0 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) Lus10019470 [exp] 137 / 2e-38 AT5G52450 378 / 5e-127 MATE efflux family protein (.1) Lus10028540 [exp] 133 / 3e-36 AT1G15170 537 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G051900 [exp] 229 / 9e-74 AT5G52450 644 / 0.0 MATE efflux family protein (.1) Potri.010G116700 [exp] 199 / 7e-62 AT5G52450 558 / 0.0 MATE efflux family protein (.1) Potri.006G170900 [exp] 186 / 6e-57 AT5G52450 486 / 2e-169 MATE efflux family protein (.1) Potri.006G171240 [exp] 186 / 6e-57 AT5G52450 486 / 3e-169 MATE efflux family protein (.1) Potri.011G117400 [exp] 141 / 9e-40 AT3G23550 540 / 0.0 MATE efflux family protein (.1) Potri.010G116900 [exp] 138 / 8e-39 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.010G117000 [exp] 136 / 4e-38 AT1G15170 545 / 0.0 MATE efflux family protein (.1) Potri.008G126500 [exp] 135 / 7e-38 AT1G15170 546 / 0.0 MATE efflux family protein (.1) Potri.019G075800 [exp] 133 / 3e-37 AT1G71140 407 / 2e-139 MATE efflux family protein (.1) Potri.011G117300 [exp] 132 / 1e-36 AT3G23560 547 / 0.0 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10042705 pacid=23181889 polypeptide=Lus10042705 locus=Lus10042705.g ID=Lus10042705.BGIv1.0 annot-version=v1.0 ATGGTGAATCAGTTAGGAACGGCAAGCGCACTGGGCACATTTTGCGGGCAAGCATACGGTGCAAAACAGTACCACACCATGACCATGCACACTCAACGAG CCATGCTAGTCGTACTACTCCTCAGCATTCCCTTGTCCATCATATGGTTCAACACAGCCCCAATCCTGATCGCATCAGGACAACAAAACGACGTCTCAAC AGCCGCCGGAGCCTACCTCCGGTTCATGATCCCCAGCATTTTCGCCTACGGTATCCTACAGTGCCTCGTCAAGTTCCTCCAGACTCAAAGCATCGTCCTC CCCATGGTGCTCTGCTCTGCCACCGTCACTCTGCTCCACATCCTCCTTTGCTGCGCCATCGTGCTCAAGCTCGGCACAGAGACTTGGACTGGGTTTTCTA GAGAAGCGTTCTGCGATATTTGGACTTTCCTCAAGCTTGCTATTCCTTCTGCTTTCATGGTCTGCTTGGAATTGTGGTGCTTTGAGATGTTGGTTCTTGG TGCTGGCCTTCTCCCTAACCCGAAATTGGAGACATCTGTTTTGTCAATTACTACGTAA
AA sequence Show only first row Show all	>Lus10042705 pacid=23181889 polypeptide=Lus10042705 locus=Lus10042705.g ID=Lus10042705.BGIv1.0 annot-version=v1.0 MVNQLGTASALGTFCGQAYGAKQYHTMTMHTQRAMLVVLLLSIPLSIIWFNTAPILIASGQQNDVSTAAGAYLRFMIPSIFAYGILQCLVKFLQTQSIVL PMVLCSATVTLLHILLCCAIVLKLGTETWTGFSREAFCDIWTFLKLAIPSAFMVCLELWCFEMLVLGAGLLPNPKLETSVLSITT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73700			MATE efflux family protein (.1...		Lus10042705 [exp]	0	1
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10000481 [exp]	2.0	1.0000
AT5G13660			unknown protein		Lus10005963 [exp]	2.8	1.0000
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10030409 [exp]	3.5	1.0000
AT5G20260			Exostosin family protein (.1)		Lus10039981 [exp]	4.0	1.0000
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000683 [exp]	5.9	1.0000
					Lus10001790 [exp]	6.5	1.0000
					Lus10006164 [exp]	7.0	1.0000
AT4G38260			Protein of unknown function (D...		Lus10016023 [exp]	8.0	0.9994
AT4G02300			Plant invertase/pectin methyle...		Lus10001466 [exp]	8.1	0.9864
AT2G01690			ARM repeat superfamily protein...		Lus10003679 [exp]	8.5	0.9937

Compare expression of checked genes

Lus10042705 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.