Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18430 271 / 4e-94 Calcium-binding EF-hand family protein (.1.2) AT3G22930 58 / 8e-11 CML11 calmodulin-like 11 (.1) AT3G51920 57 / 1e-10 CML9, CAM9, ATCML9 CALMODULIN LIKE PROTEIN 9, calmodulin 9 (.1) AT4G14640 54 / 2e-09 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT3G56800 46 / 1e-06 ACAM-3, CAM3 calmodulin 3 (.1) AT2G27030 46 / 1e-06 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT2G41110 46 / 1e-06 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT4G37010 43 / 2e-05 CEN2 centrin 2 (.1.2) AT2G41090 40 / 0.0004 Calcium-binding EF-hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029670 [exp] 341 / 8e-122 AT3G18430 277 / 1e-96 Calcium-binding EF-hand family protein (.1.2) Lus10010775 [exp] 257 / 8e-89 AT3G18430 273 / 6e-95 Calcium-binding EF-hand family protein (.1.2) Lus10022173 [exp] 237 / 8e-81 AT3G18430 257 / 6e-89 Calcium-binding EF-hand family protein (.1.2) Lus10039391 [exp] 59 / 4e-11 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1) Lus10001775 [exp] 47 / 5e-07 AT2G27030 192 / 1e-63 calmodulin 5 (.1.2.3) Lus10024830 [exp] 44 / 1e-05 AT4G14640 176 / 2e-57 calmodulin-like 8, calmodulin 8 (.1) Lus10032205 [exp] 39 / 0.0008 AT1G12310 263 / 7e-92 Calcium-binding EF-hand family protein (.1) Lus10024567 [exp] 39 / 0.0008 AT1G12310 261 / 2e-91 Calcium-binding EF-hand family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G030300 [exp] 292 / 1e-102 AT3G18430 295 / 6e-104 Calcium-binding EF-hand family protein (.1.2) Potri.018G103600 [exp] 251 / 2e-86 AT3G18430 264 / 2e-91 Calcium-binding EF-hand family protein (.1.2) Potri.008G159300 [exp] 58 / 7e-11 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1) Potri.010G080900 [exp] 55 / 7e-10 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.005G215700 [exp] 45 / 2e-06 AT3G22930 200 / 8e-67 calmodulin-like 11 (.1) Potri.003G115000 [exp] 38 / 0.0009 AT1G12310 266 / 4e-93 Calcium-binding EF-hand family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042708 pacid=23181835 polypeptide=Lus10042708 locus=Lus10042708.g ID=Lus10042708.BGIv1.0 annot-version=v1.0 ATGGGGAGTGCCTTGTCTATGTTAACTCAATATGACATAGAAGAAGTTGAGGAGCACTGTCACCATTTATTCTCCCAGCAGGAAATAGTGTCCTTGTATA AGAGATTCTGTCAGCTAGATCGGAATGCTAAAGGATACATCTCCGCAGACGAATTCTTATCGGTGCCCGAGTTTGCTATGAATCCCCTTTCTCAGCGGCT CGTTAATATAGTGGATGGCTTCAACTTCAAGGATTTTGTAGCATTCTTATCTTCATTCAGTTCTAAAGCAACCAACGAGCAGAAAATTGCGTTGATATTC AAAGTATATAACCCAGATGGAAATGGGAAAGTGCCTTTCAAGGACATTTTAAGGGTGCTTGCTGATTTGTCTGGTTCATTCATGTCAGCTGAGGAAAGAG AGAAAATACTAACCGAGGTTATTAAGGAAGCAGGTTACTCAAAGGAAGGTTACCTATTGCTAGATGACTTCATCAAGGTGTTTGGGCGTTCAAGCTTAAA AATGGAAGTTGAAATTCCAGTTGATTAA
AA sequence Show only first row Show all	>Lus10042708 pacid=23181835 polypeptide=Lus10042708 locus=Lus10042708.g ID=Lus10042708.BGIv1.0 annot-version=v1.0 MGSALSMLTQYDIEEVEEHCHHLFSQQEIVSLYKRFCQLDRNAKGYISADEFLSVPEFAMNPLSQRLVNIVDGFNFKDFVAFLSSFSSKATNEQKIALIF KVYNPDGNGKVPFKDILRVLADLSGSFMSAEEREKILTEVIKEAGYSKEGYLLLDDFIKVFGRSSLKMEVEIPVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18430			Calcium-binding EF-hand family...		Lus10042708 [exp]	0	1
AT1G22430			GroES-like zinc-binding dehydr...		Lus10004786 [exp]	1.0	0.9698
AT5G14860			UDP-Glycosyltransferase superf...		Lus10022222 [exp]	2.0	0.9460
AT1G79510			Uncharacterized conserved prot...		Lus10009597 [exp]	2.8	0.9537
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10011288 [exp]	2.8	0.9350
AT1G34060			Pyridoxal phosphate (PLP)-depe...		Lus10028695 [exp]	4.6	0.9361
AT1G79510			Uncharacterized conserved prot...		Lus10001766 [exp]	4.6	0.9476
AT2G15020			unknown protein		Lus10013880 [exp]	5.5	0.9436
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10042875 [exp]	6.5	0.9032
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10001887 [exp]	7.1	0.8950
AT2G47490		ATNDT1	NAD+ transporter 1, ARABIDOPSI...		Lus10001463 [exp]	7.1	0.9312

Compare expression of checked genes

Lus10042708 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.