Plant FIBer expression Database

Lus10042709 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G24450 61 / 1e-11 Transcription factor IIIC, subunit 5 (.1)
AT3G49410 59 / 7e-11 Transcription factor IIIC, subunit 5 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029671
[exp]
134 / 3e-41 AT3G49410 53 / 4e-09 Transcription factor IIIC, subunit 5 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G007200
[exp]
64 / 2e-12 AT5G24450 533 / 0.0 Transcription factor IIIC, subunit 5 (.1)
PFAM info
Representative CDS sequence
>Lus10042709 pacid=23181797 polypeptide=Lus10042709 locus=Lus10042709.g ID=Lus10042709.BGIv1.0 annot-version=v1.0
ATGGCGAGATTTCTGTCAGTATATCCACAGCCAGGTGCAGAAAAACTGCACAAGGCTGCTTTACAGTATTTTGAAAAGTCAAAGAAGCAGAGTGCCTTAG
AAGTTTTTCAAAAGGAAGCCCACCCGAGTGACACAGATGATAATTTGGGTGGTAATCAACAAGACACAGCGGACATTGCTATAGATGAACTTGCAGCTGA
TGATGATCAAGAAGAGGAAATTGATGTATATGATGCTCTAGATTTGGCTGGGGAAGATGACGAGTTCTCACTGCATTCAGATTCATATATGGAAACAGAT
AGCAATTCAAGAAACTATCTACAAGAGCTCTTCAATAGCTTCCCAACAACTGAACCTGGAGCTGGCAAAATACATGATGCTGACAGCAGCGATGGCGAAT
ATCAAATACTCGAGCAAGACGATGAGAATTACTCTGACGATGATTACGAATGA
AA sequence
>Lus10042709 pacid=23181797 polypeptide=Lus10042709 locus=Lus10042709.g ID=Lus10042709.BGIv1.0 annot-version=v1.0
MARFLSVYPQPGAEKLHKAALQYFEKSKKQSALEVFQKEAHPSDTDDNLGGNQQDTADIAIDELAADDDQEEEIDVYDALDLAGEDDEFSLHSDSYMETD
SNSRNYLQELFNSFPTTEPGAGKIHDADSSDGEYQILEQDDENYSDDDYE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G49410 Transcription factor IIIC, sub... Lus10042709
[exp]
0 1
AT3G49410 Transcription factor IIIC, sub... Lus10029671
[exp]
2.4 0.8404
AT3G07740 HXA2, HXA02, HA... homolog of yeast ADA2 2A (.1.2... Lus10000540
[exp]
3.7 0.8409
AT2G22540 MADS AGL22, SVP SHORT VEGETATIVE PHASE, AGAMOU... Lus10035942
[exp]
3.9 0.8634
AT1G32070 ATNSI nuclear shuttle interacting (.... Lus10003245
[exp]
13.4 0.8376
AT3G28760 unknown protein Lus10005250
[exp]
14.7 0.8248
AT5G41480 EMB9, ATDFA, GL... GLOBULAR ARREST1, EMBRYO DEFEC... Lus10014939
[exp]
16.7 0.8401
AT1G22940 THIE, TH-1, TH1 THIAMINEE, THIAMINE REQUIRING ... Lus10015466
[exp]
18.7 0.8351
AT1G53120 RNA-binding S4 domain-containi... Lus10041931
[exp]
19.4 0.7960
AT4G27680 P-loop containing nucleoside t... Lus10008835
[exp]
20.8 0.8113
AT1G20693 HMGBETA1, NFD2,... NUCLEOSOME/CHROMATIN ASSEMBLY ... Lus10013219
[exp]
21.9 0.8300

Lus10042709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.