Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49410 360 / 3e-120 Transcription factor IIIC, subunit 5 (.1) AT5G24450 356 / 3e-119 Transcription factor IIIC, subunit 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029672 [exp] 679 / 0 AT3G49410 395 / 3e-134 Transcription factor IIIC, subunit 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G007200 [exp] 424 / 1e-145 AT5G24450 533 / 0.0 Transcription factor IIIC, subunit 5 (.1) Potri.007G145000 [exp] 389 / 4e-133 AT5G24450 461 / 1e-158 Transcription factor IIIC, subunit 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF09734 [flax] [poplar] Tau95 RNA polymerase III transcription factor (TF)IIIC subunit HTH domain
Representative CDS sequence Show only first row Show all	>Lus10042710 pacid=23181676 polypeptide=Lus10042710 locus=Lus10042710.g ID=Lus10042710.BGIv1.0 annot-version=v1.0 ATGGGGGTGATCGAAGATGGAAGAGTAGAGGGAACACTACCCAGTAGTGAGGTCTTTGCTGTACAATACCCTGGCTATCCTTCCTCAATTCCTCGCGCTA TCCAAACTCTTGGTGGAACTAAAGCAATTGCCAAGGCTCGAGCTTCGAAATCAAACAATTTGGAGCTCCAGTTTCGCCCAGAAGATCCATACTCTCGTCC TATTTCAGGGCAGCTCTGTCCCTGTAACGGCTTGCTGCTCAAAATTGTCAAAAACCAACCTTCCTCCCAGAATGCAAATAATTCTCCTACTACTAGTACT GATAAGGGTAGGAGTCAAGTTGAAGATGATGCAAAAGTTTCTGCTGAGATTGTTGGCCGGGTCACAGAAGCTTATCGCTTTGAAGGAATGGCGGATTACC AACATGTAGTTGCTGTACATGCTGATGTGGCTCGCAGGAAAAAGAGGAACTGGACTGAAATGGATAAGCCACATTTTGAAACGGCTGGTCTCATGGATTT AGATCAAGAGGATGGCAAGATTTTGCCGCCACCTTCTTTTTCAGCCAAAGATACCCCCAGTAATATAGTGTTGAGACCAACAAGCACTATAAGCTCAAAG AAGAAACCTGAAGAAGCAGTTGAAAACTCTATGGAGTTCTACTTAGCAGCCTTACAGATACCTAAGAAATTAAACTGGAAAGAATTTGCACCTCCAAAAT CGGTGATGCATGACTGGCTGATGGCTTTATCTGAGTTGTTTGAGGAGCGACCTATATGGCCTAAGGAGTCTCTGGTCCAGCGCTTACATGAAAAGGATCT ACATTTTAATCATCAAACACTTAAGAGGCTATTAGTACTGGTCGCTTACTACTTTTTAGGTGGGCCGTACCGAATGTTTTGGATCCAAAAAGGTTATGAT CCTCGCCAAGATCCTGAATCTCGAATCTACCAAAGAATGGATTTACGAGTTCCGCCTGCATTAAGGAGTTATTGTGATTCTAATGCTGCTAAAGGCTTAA AACACAAATGGGAGGATTTATGCAAGTTTGAAGCTTTTCCTTACAAATGTCATATATCGTTGCAACTCTTTGAACTTGTTGATGATTATATTCAAGAAGA GATAAAGAAACCATCCAAGCAGACTACTTGCACTGTGAGTTAG
AA sequence Show only first row Show all	>Lus10042710 pacid=23181676 polypeptide=Lus10042710 locus=Lus10042710.g ID=Lus10042710.BGIv1.0 annot-version=v1.0 MGVIEDGRVEGTLPSSEVFAVQYPGYPSSIPRAIQTLGGTKAIAKARASKSNNLELQFRPEDPYSRPISGQLCPCNGLLLKIVKNQPSSQNANNSPTTST DKGRSQVEDDAKVSAEIVGRVTEAYRFEGMADYQHVVAVHADVARRKKRNWTEMDKPHFETAGLMDLDQEDGKILPPPSFSAKDTPSNIVLRPTSTISSK KKPEEAVENSMEFYLAALQIPKKLNWKEFAPPKSVMHDWLMALSELFEERPIWPKESLVQRLHEKDLHFNHQTLKRLLVLVAYYFLGGPYRMFWIQKGYD PRQDPESRIYQRMDLRVPPALRSYCDSNAAKGLKHKWEDLCKFEAFPYKCHISLQLFELVDDYIQEEIKKPSKQTTCTVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49410			Transcription factor IIIC, sub...		Lus10042710 [exp]	0	1
AT3G49410			Transcription factor IIIC, sub...		Lus10029672 [exp]	2.8	0.8768
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10016716 [exp]	3.3	0.9178
AT3G21430	MYB	ATALY3	ARABIDOPSIS THALIANA ALWAYS EA...		Lus10002879 [exp]	4.0	0.8928
AT5G59710		ATVIP2, VIP2	VIRE2 interacting protein 2 (....		Lus10004921 [exp]	6.2	0.8848
AT5G54090			DNA mismatch repair protein Mu...		Lus10032917 [exp]	10.6	0.8693
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Lus10029717 [exp]	13.2	0.8513
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Lus10030445 [exp]	13.7	0.8744
AT2G45700			sterile alpha motif (SAM) doma...		Lus10038078 [exp]	14.1	0.8754
AT1G07705			NOT2 / NOT3 / NOT5 family (.1....		Lus10040875 [exp]	15.4	0.8525
AT4G21660			proline-rich spliceosome-assoc...		Lus10018475 [exp]	15.9	0.8508

Compare expression of checked genes

Lus10042710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.