Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02240 164 / 5e-49 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT5G24560 157 / 3e-47 ATPP2-B12 phloem protein 2-B12 (.1) AT2G02340 153 / 5e-45 ATPP2-B8 phloem protein 2-B8 (.1) AT2G02360 152 / 1e-44 ATPP2-B10 phloem protein 2-B10 (.1) AT2G02250 146 / 5e-42 ATPP2-B2 phloem protein 2-B2 (.1) AT2G02230 144 / 4e-41 ATPP2-B1 phloem protein 2-B1 (.1) AT1G80110 138 / 9e-40 ATPP2-B11 phloem protein 2-B11 (.1) AT2G02310 118 / 1e-31 ATPP2-B6 phloem protein 2-B6 (.1) AT2G02320 111 / 5e-29 ATPP2-B7 phloem protein 2-B7 (.1) AT2G02300 106 / 3e-27 ATPP2-B5 phloem protein 2-B5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029673 [exp] 443 / 2e-159 AT2G02230 180 / 4e-55 phloem protein 2-B1 (.1) Lus10018171 [exp] 163 / 2e-48 AT2G02240 219 / 2e-69 maternal effect embryo arrest 66, F-box family protein (.1) Lus10042713 [exp] 160 / 1e-47 AT2G02230 235 / 1e-75 phloem protein 2-B1 (.1) Lus10025666 [exp] 161 / 2e-47 AT5G24560 219 / 5e-69 phloem protein 2-B12 (.1) Lus10029674 [exp] 159 / 3e-47 AT2G02230 237 / 2e-76 phloem protein 2-B1 (.1) Lus10023207 [exp] 143 / 3e-41 AT2G02240 213 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Lus10008898 [exp] 141 / 2e-40 AT5G24560 212 / 3e-68 phloem protein 2-B12 (.1) Lus10015208 [exp] 126 / 2e-34 AT1G09155 270 / 2e-90 phloem protein 2-B15 (.1) Lus10031484 [exp] 125 / 1e-33 AT1G09155 260 / 1e-85 phloem protein 2-B15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G267000 [exp] 176 / 1e-53 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G015800 [exp] 172 / 3e-52 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1) Potri.006G266900 [exp] 163 / 1e-48 AT2G02240 215 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016100 [exp] 162 / 2e-48 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.018G016000 [exp] 161 / 5e-48 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.001G050100 [exp] 150 / 4e-44 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.005G022000 [exp] 137 / 7e-39 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.013G012600 [exp] 114 / 4e-30 AT1G09155 281 / 1e-94 phloem protein 2-B15 (.1) Potri.001G109800 [exp] 71 / 5e-14 AT1G12710 408 / 1e-144 phloem protein 2-A12 (.1) Potri.014G075800 [exp] 69 / 2e-13 AT3G61060 397 / 4e-140 phloem protein 2-A13 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042712 pacid=23182068 polypeptide=Lus10042712 locus=Lus10042712.g ID=Lus10042712.BGIv1.0 annot-version=v1.0 ATGGAAGAACTCCCAGAGAATTGCATAATGAAAATATTAACCTTCGCAGGTCCTCAGGAGTCATGCAGGCTTGCTATCCTCTCCACCATTTTCAAATCAG CTTCCCGATTCGACGGTCTCTGGGAATCCTTCCTCCCACCGGACTACCGAACCCTCATCTCCCAATCCTCCAATCCCTCTCTTCTCTCCGATTCCACTTC CAAGAGACACCTCGTCATCACCCTCTGCCACCACCCTATCCTCATCCGCAACGCCACAATGAGTCTGATGCTGGACAAACGTACCGGGAAGAATATAGTG ATCACAGGGGCCACGGAGCTTTCAATTGCATGGGGTAACAATCCGGAGTACTGGCAATTGAGGAGCGACGATCCGGATTCCATGTTCCCTCAAGTCGCGG AGCTTTTGAAAGTTTGCTGGTTCGAGATTTCAGCTAGACTGGACATGATGAGCAGCCGTACGTCGACCTTGTTGTCCCCGGAGAGCTTCTACGCGGCCTA CTTTGTATTCAAGATGACGAGGGGTGCGGCGTCAGGGTTCGAGAATCGACCGGTGGAGGCTGAGGTGAGAGTTTCCGGAAGTGTTGTCAGCCATGGAGTG GTGTTTCTGGAAGGCGAAGGCGGCGACGGGCGGCCGACGAAGAGAGGTGACGGTTGGTGCGAGGTGAAGATTGGAGAGTTCTGGACGCCACCGCCGGCGG AAGAGGAGGAGGAGCGATGGTTGGATTTGAAGCTGCTGAATCGTACCGGTAACTGGAAGAAGGGTGTCATTGTTCAGGGAATTGAATTCAGGCCTTGTTA A
AA sequence Show only first row Show all	>Lus10042712 pacid=23182068 polypeptide=Lus10042712 locus=Lus10042712.g ID=Lus10042712.BGIv1.0 annot-version=v1.0 MEELPENCIMKILTFAGPQESCRLAILSTIFKSASRFDGLWESFLPPDYRTLISQSSNPSLLSDSTSKRHLVITLCHHPILIRNATMSLMLDKRTGKNIV ITGATELSIAWGNNPEYWQLRSDDPDSMFPQVAELLKVCWFEISARLDMMSSRTSTLLSPESFYAAYFVFKMTRGAASGFENRPVEAEVRVSGSVVSHGV VFLEGEGGDGRPTKRGDGWCEVKIGEFWTPPPAEEEEERWLDLKLLNRTGNWKKGVIVQGIEFRPC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10042712 [exp]	0	1
AT1G09812			unknown protein		Lus10035787 [exp]	2.2	0.9222
AT1G52140			unknown protein		Lus10012967 [exp]	3.7	0.9031
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10037217 [exp]	5.2	0.9138
AT1G52140			unknown protein		Lus10025828 [exp]	5.5	0.9068
AT4G26490			Late embryogenesis abundant (L...		Lus10032906 [exp]	6.0	0.9124
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Lus10008946 [exp]	8.0	0.9145
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10029673 [exp]	8.1	0.8865
AT3G07420		ATNS2, SYNC2_AR...	SYNTHETASE C2, asparaginyl-tRN...		Lus10025874 [exp]	14.9	0.9066
AT3G16330			unknown protein		Lus10038274 [exp]	15.2	0.9023
AT5G16530		PIN5	PIN-FORMED 5, Auxin efflux car...		Lus10026994 [exp]	15.5	0.8487

Compare expression of checked genes

Lus10042712 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.