Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02230 225 / 7e-72 ATPP2-B1 phloem protein 2-B1 (.1) AT5G24560 220 / 5e-71 ATPP2-B12 phloem protein 2-B12 (.1) AT2G02240 221 / 1e-70 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT1G80110 217 / 1e-69 ATPP2-B11 phloem protein 2-B11 (.1) AT2G02360 208 / 3e-66 ATPP2-B10 phloem protein 2-B10 (.1) AT2G02250 206 / 8e-65 ATPP2-B2 phloem protein 2-B2 (.1) AT2G02340 196 / 5e-61 ATPP2-B8 phloem protein 2-B8 (.1) AT1G09155 195 / 1e-60 ATPP2-B15 phloem protein 2-B15 (.1) AT1G56240 190 / 9e-59 ATPP2-B13 phloem protein 2-B13 (.1) AT1G56250 185 / 8e-57 ATPP2-B14 phloem protein 2-B14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029674 [exp] 526 / 0 AT2G02230 237 / 2e-76 phloem protein 2-B1 (.1) Lus10018171 [exp] 363 / 6e-126 AT2G02240 219 / 2e-69 maternal effect embryo arrest 66, F-box family protein (.1) Lus10025666 [exp] 359 / 3e-124 AT5G24560 219 / 5e-69 phloem protein 2-B12 (.1) Lus10008898 [exp] 231 / 8e-75 AT5G24560 212 / 3e-68 phloem protein 2-B12 (.1) Lus10023207 [exp] 227 / 3e-73 AT2G02240 213 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Lus10020674 [exp] 226 / 7e-73 AT1G09155 266 / 7e-89 phloem protein 2-B15 (.1) Lus10029872 [exp] 222 / 2e-71 AT1G09155 272 / 3e-91 phloem protein 2-B15 (.1) Lus10020673 [exp] 211 / 6e-67 AT1G09155 272 / 2e-91 phloem protein 2-B15 (.1) Lus10015208 [exp] 199 / 5e-62 AT1G09155 270 / 2e-90 phloem protein 2-B15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G267000 [exp] 322 / 3e-110 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G015800 [exp] 322 / 4e-110 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1) Potri.006G266900 [exp] 259 / 2e-85 AT2G02240 215 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016000 [exp] 257 / 7e-85 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.005G022000 [exp] 236 / 9e-77 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.018G016100 [exp] 234 / 5e-76 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.013G012600 [exp] 219 / 3e-70 AT1G09155 281 / 1e-94 phloem protein 2-B15 (.1) Potri.001G050100 [exp] 198 / 5e-62 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.013G012666 [exp] 115 / 4e-31 AT1G09155 120 / 2e-33 phloem protein 2-B15 (.1) Potri.012G120400 [exp] 106 / 8e-27 AT4G19840 233 / 1e-76 phloem protein 2-A1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10042713 pacid=23181717 polypeptide=Lus10042713 locus=Lus10042713.g ID=Lus10042713.BGIv1.0 annot-version=v1.0 ATGGACACAATCAAATCCTCGACGCCGCCACCGCCGCCCAGTATGAACGACCTCCCGGAAGACCTGATCGCCAACGTCCTCTCCTTCACCAGCCCTCAGG AATCTTGCCGATTGGCCCTGGTTTCCTCCAGTTTTTGGTCTGCTTCTATCTCCGACGCCGTCTGGGAGCGATTCCTGCCTCCCGATTACCTCTACCTCCT TTCCTCCTCTGTTTCTAATCCTAGCTGGAGTTCCAAGAAGGATCTATTCCGCCGCCTCTGTCATACCCCTCTTCTCATCGATGGCGGCAAAAGGAGCTTT TCGTTGGAGAAGCGGAGCGGGAAGAAATGCTACATGATCTCATCAAGGGATCTAGACATTGTATGGGGCGATACTCCTAGATATTGGAAATGGATCCCCG ATCCTGATACAAGATTTGGGGAAGTTGCTGAGCTTGTGGGCGTATGTTGGTTGGAGGTGAAGGGAACAATTGCAACAACAATGTTGTCCCCTGCTACATT GTACACAGCTTACCTTGTGTTCAAGTCTCCACTTGGAGTCTACGGATTCGACCACCAGCCTGTCGAAGTTTCGGTGGGGCTGGCCGGGTGCGAGAAGAAC TTTGTTCCTGCTTACCTTGATGCAGGAATTGAGAGGAGGAGGAGGCTCCAGCTGGTGACCATTCCCAGGAGGGTAGGTGGGTCTGCACGTAGAGTCATGA CCGGATTTAACAACCCTCCAGAAGAAATTATCAGTGGAGGTACTAGTGAGGATGGAGGGCTGTATCCAAAGGAGAGAAGAGACGGGTGGTTTGAGGTCGA GCTGGGGGAGTTCTTCACAAAGGAAGGTGAAGCTGGGGAGTTGGAGATTTGTATTTATGAGGTGAAAGGTGGGAATTGGAAAGGTGGCCTTCTGGTTCAA GGCATTGAGATCAGGCCAAAACAGAGTGAATAG
AA sequence Show only first row Show all	>Lus10042713 pacid=23181717 polypeptide=Lus10042713 locus=Lus10042713.g ID=Lus10042713.BGIv1.0 annot-version=v1.0 MDTIKSSTPPPPPSMNDLPEDLIANVLSFTSPQESCRLALVSSSFWSASISDAVWERFLPPDYLYLLSSSVSNPSWSSKKDLFRRLCHTPLLIDGGKRSF SLEKRSGKKCYMISSRDLDIVWGDTPRYWKWIPDPDTRFGEVAELVGVCWLEVKGTIATTMLSPATLYTAYLVFKSPLGVYGFDHQPVEVSVGLAGCEKN FVPAYLDAGIERRRRLQLVTIPRRVGGSARRVMTGFNNPPEEIISGGTSEDGGLYPKERRDGWFEVELGEFFTKEGEAGELEICIYEVKGGNWKGGLLVQ GIEIRPKQSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10042713 [exp]	0	1
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10002738 [exp]	2.6	0.8182
AT4G40060	HD	ATHB16 ,ATHB-16	homeobox protein 16 (.1)		Lus10012753 [exp]	4.9	0.7891
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10018153 [exp]	6.5	0.7926
AT1G71950			Proteinase inhibitor, propepti...		Lus10038252 [exp]	12.6	0.8103
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10020519 [exp]	13.2	0.8065
AT3G11110			RING/U-box superfamily protein...		Lus10009832 [exp]	13.7	0.7047
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Lus10038760 [exp]	15.2	0.7245
AT4G31270	Trihelix		sequence-specific DNA binding ...		Lus10026986 [exp]	15.9	0.7753
AT1G54070			Dormancy/auxin associated fami...		Lus10013180 [exp]	17.2	0.7125
AT5G43280		ATDCI1	"delta\(3,5\),delta\(2,4\)-die...		Lus10002583 [exp]	17.3	0.7983

Compare expression of checked genes

Lus10042713 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.