Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69740 588 / 0 HEMB1 Aldolase superfamily protein (.1.2) AT1G21760 475 / 1e-162 ATFBP7 F-box protein 7 (.1) AT1G44318 467 / 2e-158 HEMB2 Aldolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029675 [exp] 649 / 0 AT1G69740 663 / 0.0 Aldolase superfamily protein (.1.2) Lus10029676 [exp] 605 / 0 AT1G21760 444 / 5e-156 F-box protein 7 (.1) Lus10042637 [exp] 42 / 0.0004 AT4G24210 186 / 6e-61 SLEEPY1, F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G082300 [exp] 592 / 0 AT1G69740 648 / 0.0 Aldolase superfamily protein (.1.2) Potri.002G082500 [exp] 529 / 0 AT1G21760 474 / 7e-170 F-box protein 7 (.1) Potri.005G178600 [exp] 521 / 0 AT1G21760 479 / 6e-172 F-box protein 7 (.1) Potri.014G022100 [exp] 46 / 2e-05 AT4G24210 182 / 1e-59 SLEEPY1, F-box family protein (.1) Potri.002G122300 [exp] 45 / 7e-05 AT4G24210 185 / 2e-60 SLEEPY1, F-box family protein (.1) Potri.017G092800 [exp] 43 / 0.0005 AT5G39250 334 / 7e-117 F-box family protein (.1) Potri.004G119500 [exp] 42 / 0.0007 AT5G39250 347 / 8e-122 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00490 [flax] [poplar] ALAD Delta-aminolevulinic acid dehydratase CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10042716 pacid=23181925 polypeptide=Lus10042716 locus=Lus10042716.g ID=Lus10042716.BGIv1.0 annot-version=v1.0 ATGTCTTCAGATTTCGCCGTACAAGTTCCCGCAGAGCTGGAATCGGCTTTGCAGTTGAAGACTGTGCGCTATTTTGTCACTCAGAGGCCATGGCTCGATC TTTATGGAGTTCATGTACGCCCTGTTGCACCGTTTTGGAGCACGAGCAGAAGACTAGATGCTGATCCCGCCTTAATCCACCGTTCCTTGCCTGATGAGCT GCTCTTTGAGGTATTTTCACGAATGAATGCATATGATCTTGGGAGGGCAGCTTGTGCTTGCAGAAAGTGGAGATATGCTATCCGTAGCCCTGTTCTTTGG CGCAATGCCTGCTTAAAGGCTTGGCAATTATTTGGTGTGGTGGAAAACTACAAGCTTTTGCAGTCAAAATATGAAAGCTCATGGAGAAAAATGTGGTTTT TAAGACCCAGGATCCGAACTGATGGTCTCTATGTGAGCAGAAACACATATATCCGTACTGGAGTGCGAGAGTGGAGTGTAACCAATCCAGTTCACCTGGT TTGCTATTTCCGTTACATGAGACTTTTTCCTTCCGGGAGGTTCCTTTACAAAAATTCTTCTCAAGTGGTGAAAGAAGTTGTGAAGATTATGAACCCCCGT GCACCGAAAGCTGATGGTGTGTTCAACGGTCGTTACACACTGAATGATGACCGGGTTGAAGCTGCTTTTCTGTATTCTGGATTGCGTCCTACTTTGTGGA AGATCCGCTTAAGGTTACGAGGGACAACACAAGGTGCAAACAATCGTATGGATTTGCTTTCTCTGGTGACTAGCAAAGTGAACAGTGAGGGCATCAATGG GCCAGAGGAAGAGGTCCTTGGGGTGATTGATGGCTTGGAGGATGAGATCTCACGTACATCTCACAAGAGAGGTCTCGCTCCGTTTGTGTTCGTCCCTTTT GAAGAGGTGGATGCGCATGTACTGAATCTACCAGTGGAAAAGATGGATTATTACGTTCCTGGCGGTATCCCGGTCAAGACTGGGTTGAGCGATGCGGAGT GTGAAGCTGCTGTTGCGGCAGGGAAAGTACCCGAGGCGCCTCCTGTCCCGCCGACCCCCGCTGCTCCCGCCGGAACTCCCGTCGTTACTACGCTCCCACT TTCTCGACGCCCTCGTCGTAATCGACGATCACCTGCTTTGAGAGCAGCATTTCAGGAAACCACTATATCACCGGCGAATTTGGTGTATCCGCTTTTCATT CACGAAGGTGAGGAGGATACTCCTATTGGGGCAATGCCTGGATGTTATAGGCTTGGATGGAGACATGGACTCTTGGAAGAGGTCGCAAAGGCCCGGGATG TTGGTGTAAACAGTATTGTACTCTTCCCCAAAGTTCCCGATGCTGTGAAGTCCCCTACTGGAGATGAAGCTTACAATGAGGATGGCCTAGTTCCGAGGAC CATACGGCTGCTAAAGGACAGATTCCCTGATCTTGTTATATACACTGATGTTGCTCTGGATCCATATTCCTCTGATGGGCATGATGGTATCGTTAGAGAA GACGGAGTCATAATGAATGATGAGACAGTGCACCAACTATGCAAGCAAGCCGTTGCTCAGGCTCGGGCTGGAGCTGATGTTGTTAGTCCTAGTGACATGA TGGATGGTCGCGTAGGAGCTATTCGTGATGCTCTTGATGAGGCAGGGTTTCAGCATGTTCTTATCATGTCCTACACAGCAAAGTATGCGAGTTCGTTCTA TGGGCCATTCAGGGAAGCACTGGACTCAAATCCACGTTTCGGGGATAAAAAGACTTATCAGATGAATCCTGCAAATTATAGAGAGGCTTTGATCGAGGTC CACGAAGATGAATCTGAAGGAGCTGACATCCTCCTGGTAAAACCTGGTCTTCCATACTTGGATATCATCAGGCAACTGAGGGACAATTCTCCTTTGCCGA TTGCCGCATATCAGGTTTCAGGAGAGTACTCAATGATAAAGGCAGGTGGGATATTGAAAATGATAGATGAAGAAAAGGTGATGATGGAGTCACTGTTGTG TCTGAGAAGGGCAGGTGCGGATATCATCCTCACCTATTTTGCTCTGCAAGCTGCTAGATCTATGTGTGGTGAAAAGAGTTCGGGGAAGGGAAAGACATTG AAGATAACGGGAGATGAAGCTTACAATGAGGATGGCCTAGTTCCAAGAACCATACGGCTGCTAAAGGACAGATTCCCTGATCTTTGGCCTCAGTTCTTTC ATCTCGGTCGTCACTTCCACAATGCAATCATCGGCTGCCGCAAACTGCCTTTTCTTTTTCTTCTCTGGGCGTCCAGCTCCAGCAGGTGTTGCTGCTCGCT TTTTGGATTCTCCAGTCTGGACTTCCACTCCATCATTTATTATGTTCAGCATCTCTTCATCCACCACGTGGCTGTCCATTTGATCAAGAGGGATAGGTGG ACTCTCTTCACCGTCCGAGCTGCCATCTCCACCATCGGATACGATTTCTGGGTCATGACCTGA
AA sequence Show only first row Show all	>Lus10042716 pacid=23181925 polypeptide=Lus10042716 locus=Lus10042716.g ID=Lus10042716.BGIv1.0 annot-version=v1.0 MSSDFAVQVPAELESALQLKTVRYFVTQRPWLDLYGVHVRPVAPFWSTSRRLDADPALIHRSLPDELLFEVFSRMNAYDLGRAACACRKWRYAIRSPVLW RNACLKAWQLFGVVENYKLLQSKYESSWRKMWFLRPRIRTDGLYVSRNTYIRTGVREWSVTNPVHLVCYFRYMRLFPSGRFLYKNSSQVVKEVVKIMNPR APKADGVFNGRYTLNDDRVEAAFLYSGLRPTLWKIRLRLRGTTQGANNRMDLLSLVTSKVNSEGINGPEEEVLGVIDGLEDEISRTSHKRGLAPFVFVPF EEVDAHVLNLPVEKMDYYVPGGIPVKTGLSDAECEAAVAAGKVPEAPPVPPTPAAPAGTPVVTTLPLSRRPRRNRRSPALRAAFQETTISPANLVYPLFI HEGEEDTPIGAMPGCYRLGWRHGLLEEVAKARDVGVNSIVLFPKVPDAVKSPTGDEAYNEDGLVPRTIRLLKDRFPDLVIYTDVALDPYSSDGHDGIVRE DGVIMNDETVHQLCKQAVAQARAGADVVSPSDMMDGRVGAIRDALDEAGFQHVLIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALIEV HEDESEGADILLVKPGLPYLDIIRQLRDNSPLPIAAYQVSGEYSMIKAGGILKMIDEEKVMMESLLCLRRAGADIILTYFALQAARSMCGEKSSGKGKTL KITGDEAYNEDGLVPRTIRLLKDRFPDLWPQFFHLGRHFHNAIIGCRKLPFLFLLWASSSSRCCCSLFGFSSLDFHSIIYYVQHLFIHHVAVHLIKRDRW TLFTVRAAISTIGYDFWVMT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69740		HEMB1	Aldolase superfamily protein (...		Lus10042716 [exp]	0	1
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10037407 [exp]	1.0	0.8916
AT1G67280			Glyoxalase/Bleomycin resistanc...		Lus10043235 [exp]	2.8	0.8710
AT5G19540			unknown protein		Lus10023641 [exp]	3.0	0.8699
AT3G06050		PRXIIF, ATPRXII...	peroxiredoxin IIF (.1)		Lus10041218 [exp]	5.8	0.8281
AT1G76080		ATCDSP32, CDSP3...	ARABIDOPSIS THALIANA CHLOROPLA...		Lus10005624 [exp]	6.3	0.8492
AT5G58560		FOLK	farnesol kinase, Phosphatidate...		Lus10031858 [exp]	6.7	0.8370
AT1G05385		Psb27-H1, LPA19	LOW PSII ACCUMULATION 19, phot...		Lus10006111 [exp]	9.6	0.8192
AT2G44760			Domain of unknown function (DU...		Lus10029792 [exp]	14.5	0.8481
AT1G20560		AAE1	acyl activating enzyme 1 (.1.2...		Lus10016011 [exp]	15.0	0.8143
AT2G41680		NTRC	NADPH-dependent thioredoxin re...		Lus10042048 [exp]	18.8	0.8357

Compare expression of checked genes

Lus10042716 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.