Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21780 557 / 0 BTB/POZ domain-containing protein (.1.2) AT1G55760 357 / 3e-122 BTB/POZ domain-containing protein (.1) AT2G39760 77 / 2e-15 ATBPM3 BTB/POZ/MATH-domains containing protein (.1.2) AT3G06190 69 / 1e-12 ATBPM2 BTB-POZ and MATH domain 2 (.1.2) AT1G01640 66 / 3e-12 BTB/POZ domain-containing protein (.1.2) AT3G56230 63 / 5e-11 BTB/POZ domain-containing protein (.1) AT3G03740 61 / 9e-10 ATBPM4 BTB-POZ and MATH domain 4 (.1) AT5G19000 60 / 1e-09 ATBPM1 BTB-POZ and MATH domain 1 (.1.2) AT2G30600 60 / 1e-09 BTB/POZ domain-containing protein (.1.2.3.4.5) AT4G04090 57 / 3e-09 BTB/POZ domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029677 [exp] 668 / 0 AT1G21780 538 / 0.0 BTB/POZ domain-containing protein (.1.2) Lus10008348 [exp] 385 / 3e-133 AT1G55760 516 / 0.0 BTB/POZ domain-containing protein (.1) Lus10027101 [exp] 300 / 5e-100 AT1G55760 389 / 3e-136 BTB/POZ domain-containing protein (.1) Lus10041235 [exp] 66 / 4e-12 AT3G06190 339 / 8e-117 BTB-POZ and MATH domain 2 (.1.2) Lus10021946 [exp] 66 / 1e-11 AT3G06190 620 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Lus10029732 [exp] 64 / 3e-11 AT4G08455 354 / 2e-124 BTB/POZ domain-containing protein (.1) Lus10042763 [exp] 64 / 4e-11 AT4G08455 354 / 1e-124 BTB/POZ domain-containing protein (.1) Lus10004701 [exp] 61 / 5e-10 AT2G39760 598 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Lus10040267 [exp] 61 / 1e-09 AT2G39760 597 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G178400 [exp] 587 / 0 AT1G21780 543 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.002G082800 [exp] 583 / 0 AT1G21780 535 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.001G468700 [exp] 374 / 8e-129 AT1G55760 522 / 0.0 BTB/POZ domain-containing protein (.1) Potri.010G029500 [exp] 69 / 1e-12 AT3G06190 580 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.013G083800 [exp] 66 / 8e-12 AT3G56230 305 / 2e-104 BTB/POZ domain-containing protein (.1) Potri.008G200700 [exp] 66 / 2e-11 AT3G06190 582 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.009G156500 [exp] 62 / 3e-10 AT3G03740 580 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.004G194200 [exp] 61 / 4e-10 AT3G03740 573 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.001G184200 [exp] 60 / 7e-10 AT3G03740 342 / 1e-116 BTB-POZ and MATH domain 4 (.1) Potri.002G077000 [exp] 58 / 2e-09 AT4G08455 369 / 2e-130 BTB/POZ domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10042717 pacid=23181804 polypeptide=Lus10042717 locus=Lus10042717.g ID=Lus10042717.BGIv1.0 annot-version=v1.0 ATGGTGGATTCTAAGGTGGAGACCATCTCCAGACTAGCCCAGTGGAAGATCGAGAATTTCGGTCCTTGTTCTTACAAAAAGTCCGATCCTTTCAAAGTCG GCATCTGGAATTGGCACTTGTCTGTGGAGAAGAATCGGTACCTGTATGTTCGTTTGTTTCCTGAGCCGTCTAGGGGATCCAAGGAGCAGCCTCCGATCGC CAGATTCATTCTCAGGGTGTCGTCCAATACCGGCCACAATCGGAGGCCTTACATTTCTCCAATTCACGAGAGACTGCTTCGGACATGTGATGATTTCGTG TGGCCAGTTGATAGCTCCTTTCATGGTCGATTCATCATTGACGTTGAGTTCCTGGATCTCAAAATCTGCCCTTTGAATGGGGGAGAAGCATGTTCCATAT GGCCTGGTGGTGATGGTGCAATGCAATCTGTATCCACTCAAAGCACTCTTAGATGTCTGTCACGGATGCTGGACGAGGGGATACACGCTGATGTCACCAT CAACACCGCTGAAGGCACCCTGAAAGCTCACAAGGCCATCCTTTCGGCAAGTTCGCCGGTATTTCGGAGTATGTTCCATCACGACCTCAAGGAGAAAGAG TCTTCCACCATCTACATAGACGACATGTCGACTGAATCATGTGTTGCTCTTCTGAGTTACTTGTACGGAACTATTAAGCAAGAGGATTTCTGGAGGCACC GTCTCTCGTTATTGGGTGCTGCAAACAAGTACGATATCGAATCGCTCAAAGACGCTTGCGAGGAAAGCCTCTTGGAAGATATAAACTCGGCAAACGTGTT GGAGAGGCTGCAAGAGGCCTGGCTTTACCAGCTGGAGAAGCTGAAGAAAGGATGCTTGACCTACTTGTTTGATTTTGGCAAAATATACGATGTTAGAGAA GAGATCAACAACTTTTTCAGGCAGGCTGATAGGGAACTGATGCTGCAAATGTTCCAGGAGGTGCTTACCGTCTGGAAGCCCGTGTTCGTTTCAACCGTTG TAGAAATTATAATCTCCGGCACCGGTGCCACCGCCGCATGTTTCCTCTCCGGCGCTGTCCCTGAAGTCTCCTTGATTTCTCTGGAATTGGTTACGCATCC TTGCAATGCACGTAACAGGGTGGCGATCGACTTTGCTAATTTCTTGGAGCAAACCTCAGGCAGCCGATATTTGTTGGTATAA
AA sequence Show only first row Show all	>Lus10042717 pacid=23181804 polypeptide=Lus10042717 locus=Lus10042717.g ID=Lus10042717.BGIv1.0 annot-version=v1.0 MVDSKVETISRLAQWKIENFGPCSYKKSDPFKVGIWNWHLSVEKNRYLYVRLFPEPSRGSKEQPPIARFILRVSSNTGHNRRPYISPIHERLLRTCDDFV WPVDSSFHGRFIIDVEFLDLKICPLNGGEACSIWPGGDGAMQSVSTQSTLRCLSRMLDEGIHADVTINTAEGTLKAHKAILSASSPVFRSMFHHDLKEKE SSTIYIDDMSTESCVALLSYLYGTIKQEDFWRHRLSLLGAANKYDIESLKDACEESLLEDINSANVLERLQEAWLYQLEKLKKGCLTYLFDFGKIYDVRE EINNFFRQADRELMLQMFQEVLTVWKPVFVSTVVEIIISGTGATAACFLSGAVPEVSLISLELVTHPCNARNRVAIDFANFLEQTSGSRYLLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21780			BTB/POZ domain-containing prot...		Lus10042717 [exp]	0	1
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10038334 [exp]	2.4	0.9202
AT5G05760		ATSYP31, ATSED5...	T-SNARE SED 5, syntaxin of pla...		Lus10040213 [exp]	5.5	0.9162
AT1G02305			Cysteine proteinases superfami...		Lus10010091 [exp]	7.7	0.9144
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Lus10011064 [exp]	8.1	0.9003
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10022102 [exp]	8.8	0.9110
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Lus10020019 [exp]	9.9	0.9093
AT4G21865			unknown protein		Lus10014471 [exp]	10.6	0.8926
AT5G18070		DRT101	DNA-DAMAGE-REPAIR/TOLERATION 1...		Lus10012191 [exp]	10.9	0.8553
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10033099 [exp]	12.0	0.8984
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10023828 [exp]	12.7	0.9163

Compare expression of checked genes

Lus10042717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.