Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44446 790 / 0 ATCAO, CH1 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3) AT2G24820 95 / 2e-20 AtTic55, TIC55-II, TIC55 translocon at the inner envelope membrane of chloroplasts 55-II (.1) AT3G44880 65 / 6e-11 PAO, LLS1, ACD1 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) AT4G25650 53 / 3e-07 TIC55-IV, PTC52, ACD1-LIKE TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000214 [exp] 957 / 0 AT1G44446 856 / 0.0 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3) Lus10029678 [exp] 957 / 0 AT1G44446 859 / 0.0 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3) Lus10000218 [exp] 937 / 0 AT1G44446 858 / 0.0 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3) Lus10042424 [exp] 95 / 1e-20 AT2G24820 692 / 0.0 translocon at the inner envelope membrane of chloroplasts 55-II (.1) Lus10026246 [exp] 95 / 3e-20 AT2G24820 692 / 0.0 translocon at the inner envelope membrane of chloroplasts 55-II (.1) Lus10025414 [exp] 76 / 3e-14 AT4G25650 592 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10041348 [exp] 63 / 3e-10 AT3G44880 785 / 0.0 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) Lus10037370 [exp] 60 / 3e-09 AT3G44880 791 / 0.0 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) Lus10033784 [exp] 58 / 2e-08 AT4G33820 480 / 2e-160 Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G178300 [exp] 828 / 0 AT1G44446 843 / 0.0 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3) Potri.002G083200 [exp] 825 / 0 AT1G44446 799 / 0.0 CHLOROPHYLL A OXYGENASE, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.2), Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.3) Potri.018G015700 [exp] 96 / 1e-20 AT2G24820 778 / 0.0 translocon at the inner envelope membrane of chloroplasts 55-II (.1) Potri.006G267300 [exp] 91 / 2e-19 AT2G24820 745 / 0.0 translocon at the inner envelope membrane of chloroplasts 55-II (.1) Potri.004G217200 [exp] 58 / 1e-08 AT3G44880 758 / 0.0 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) Potri.003G219550 [exp] 54 / 1e-07 AT4G25650 664 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219000 [exp] 54 / 1e-07 AT4G25650 667 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.009G004100 [exp] 54 / 2e-07 AT3G44880 612 / 0.0 LETHAL LEAF-SPOT 1 HOMOLOG, ACCELERATED CELL DEATH 1, Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (.1) Potri.001G005700 [exp] 53 / 4e-07 AT4G25650 634 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.001G005900 [exp] 52 / 6e-07 AT4G25650 731 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF08417 [flax] [poplar] PaO Pheophorbide a oxygenase CL0516 [flax] [poplar] ISP-domain PF00355 [flax] [poplar] Rieske Rieske [2Fe-2S] domain
Representative CDS sequence Show only first row Show all	>Lus10042718 pacid=23181969 polypeptide=Lus10042718 locus=Lus10042718.g ID=Lus10042718.BGIv1.0 annot-version=v1.0 ATGGTGTTGTATATGCAGAGTTGCAAAGCAGGATTTAAGGTGTTTGCGGTGTTTGGAGAGGAAGGAGGGTTGGTGGAGAAGAAGAGTCAATGGGGGCCTC TCTTCGAAGTGGAAGATCCTAGGTCTAAAATGCCACAATGTAAAGGCAAGTTCTTGGATGCCAACCAGGCTCTTGAAGTTGCTAGATTCGACATTCAATA CTGCGACTGGCGTGCGCGCCAGGATCTGCTAACAATCATGCTGCTTCATGAGAAGGTTGTGGAAGTTTTAAATCCGTTAGCACGTGAGTATAAATCAATC GGCACGATGAAGAAGGAGCTGGCTGAGTTACAAGAAGAACTAACCCAAGCTCACACACAGGTTCATATATCTGAAGCAAGAGTGTCTACTGCATTAGATA AACTAGCATACATGGAAGAGTTGGTTAACGATAAGCTCTTACAAGATAGAAGCACAGCAGAGATTGATCAAGCATCACCTTCTGTTTCCAGTGCCCCTGC TACTCCATCCGCCAAAATCGCGAGAGGAAAACCCCCAAGGAAGACCTTGAATGTCTCAGGTCCCGTCCAGCCATATCCTCCTCATCTGAAGAATTTTTGG TACCCAGTTGCGTTCTCAACCGACTTGAAGGATGACACCATGATTCCATTCGATTGCTTCGAGAAACCATGGGTAATCTTTCGCGGGAAAGATGGACAAC CAGGATGTGTCCAGAACACTTGTGCCCATCGAGCATGCCCACTCGACCTCGGTTCAGTGAACGAGGGACGAATCCAGTGTTCTTACCATGGGTGGGAGTA CTCAACAGACGGCAAGTGTGAGAAAATGCCGTCTACACGACTCCTTGATGTGAAACTAAAATCACTGCCATGTTTCGAGCAAGAAGGAATGATCTGGGTT TGGCCTGGTAATGAACCACCTGCACCCAACCTCCCTTCGTTGAAACCTCCAGCAGGTTTTCAAATACATGCTGAGATAGTCATGGAACTACCGGTGGAAC ACGGCTTACTTCTCGATAACCTCTTGGATCTTGCACATGCCCCTTTTACTCACACGTCTACTTTCGCTAAAGGCTGGAGTGTCCCCAGCTTTGTCAAGTT TCTGACGCCTGCGTCTGGCCTTCAAGGATACTGGGACCCTTATCCAATCGACATGGAATTTCGACCGCCTTGCATGGTATTGTCAACCATTGGTATCTCA AAGCCTGGAAAGCTCGAAGGGCAAAGTACGAGAGAATGTGCAACTCACCTTCACCAGCTTCACGTCTGCTTACCTTCAACAAGAAACAAGACCAGACTAT TATATAGAATGTCCCTGGATTTCGCTCCTCTTCTAAAGCATGTCCCTTTCATGCAACATCTATGGAGACATTTCGCCGAGCAGGTTCTGAACGAGGACTT GCGGCTAGTGGTTGGGCAGCAGGAACGGATGAACAATGGGGAAAATGTTTGGAATGTGCCGGTATCTTATGATAAGCTAGGAGTCAGATACAGGTTATGG AGAGATGCCGTGAACAGAGGAGAAAAGCAATTACCCTACAGCACATAA
AA sequence Show only first row Show all	>Lus10042718 pacid=23181969 polypeptide=Lus10042718 locus=Lus10042718.g ID=Lus10042718.BGIv1.0 annot-version=v1.0 MVLYMQSCKAGFKVFAVFGEEGGLVEKKSQWGPLFEVEDPRSKMPQCKGKFLDANQALEVARFDIQYCDWRARQDLLTIMLLHEKVVEVLNPLAREYKSI GTMKKELAELQEELTQAHTQVHISEARVSTALDKLAYMEELVNDKLLQDRSTAEIDQASPSVSSAPATPSAKIARGKPPRKTLNVSGPVQPYPPHLKNFW YPVAFSTDLKDDTMIPFDCFEKPWVIFRGKDGQPGCVQNTCAHRACPLDLGSVNEGRIQCSYHGWEYSTDGKCEKMPSTRLLDVKLKSLPCFEQEGMIWV WPGNEPPAPNLPSLKPPAGFQIHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSFVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGIS KPGKLEGQSTRECATHLHQLHVCLPSTRNKTRLLYRMSLDFAPLLKHVPFMQHLWRHFAEQVLNEDLRLVVGQQERMNNGENVWNVPVSYDKLGVRYRLW RDAVNRGEKQLPYST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44446		ATCAO, CH1	CHLOROPHYLL A OXYGENASE, Pheop...		Lus10042718 [exp]	0	1
AT1G44446		ATCAO, CH1	CHLOROPHYLL A OXYGENASE, Pheop...		Lus10029678 [exp]	1.4	0.9936
AT1G44446		ATCAO, CH1	CHLOROPHYLL A OXYGENASE, Pheop...		Lus10000214 [exp]	2.0	0.9794
AT1G44446		ATCAO, CH1	CHLOROPHYLL A OXYGENASE, Pheop...		Lus10000218 [exp]	3.0	0.9674
AT4G24380			unknown protein		Lus10008722 [exp]	6.2	0.8401
AT3G26570		ORF02, PHT2;1	phosphate transporter 2;1 (.1....		Lus10006210 [exp]	6.9	0.8961
AT3G56940		CRD1, CHL27, AC...	COPPER RESPONSE DEFECT 1, dica...		Lus10035398 [exp]	8.0	0.9149
AT5G54270		LHCB3*1, LHCB3*...	light-harvesting chlorophyll B...		Lus10038575 [exp]	8.8	0.9128
AT1G29930		LHCB1.3, CAB140...	LIGHT-HARVESTING CHLOROPHYLL A...		Lus10008594 [exp]	8.9	0.9040
AT5G54270		LHCB3*1, LHCB3*...	light-harvesting chlorophyll B...		Lus10037875 [exp]	10.2	0.9118
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10007104 [exp]	10.6	0.8864

Compare expression of checked genes

Lus10042718 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.