Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05270 327 / 2e-102 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G21810 268 / 3e-80 Plant protein of unknown function (DUF869) (.1) AT1G77580 239 / 2e-69 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT4G36120 138 / 2e-33 Plant protein of unknown function (DUF869) (.1) AT1G19835 135 / 1e-32 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G47900 130 / 8e-31 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT2G23360 93 / 3e-19 Plant protein of unknown function (DUF869) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029679 [exp] 1137 / 0 AT1G77580 372 / 1e-119 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10018164 [exp] 582 / 0 AT1G77580 395 / 6e-129 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10025674 [exp] 552 / 0 AT1G77580 343 / 9e-109 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10000186 [exp] 469 / 1e-157 AT1G77580 333 / 4e-106 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10012712 [exp] 188 / 9e-52 AT1G77580 233 / 1e-69 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10010888 [exp] 183 / 5e-50 AT1G77580 233 / 2e-69 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10024324 [exp] 146 / 6e-36 AT1G19835 919 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10034509 [exp] 142 / 6e-36 AT1G19835 582 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10033160 [exp] 142 / 1e-34 AT1G19835 949 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G178100 [exp] 439 / 4e-145 AT3G05270 356 / 1e-114 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.002G083400 [exp] 344 / 5e-108 AT3G05270 334 / 2e-105 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.007G098500 [exp] 282 / 8e-85 AT3G05270 310 / 7e-97 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G070400 [exp] 273 / 1e-81 AT3G05270 308 / 6e-96 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G237100 [exp] 149 / 9e-37 AT1G19835 869 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.002G024400 [exp] 145 / 1e-35 AT1G19835 941 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G140300 [exp] 103 / 2e-22 AT2G23360 551 / 0.0 Plant protein of unknown function (DUF869) (.1) Potri.009G099500 [exp] 97 / 2e-20 AT2G23360 295 / 2e-86 Plant protein of unknown function (DUF869) (.1) Potri.007G046100 [exp] 95 / 7e-20 AT2G23360 549 / 3e-180 Plant protein of unknown function (DUF869) (.1) Potri.001G304200 [exp] 86 / 4e-17 AT2G23360 279 / 2e-80 Plant protein of unknown function (DUF869) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05911 [flax] [poplar] FPP Filament-like plant protein, long coiled-coil
Representative CDS sequence Show only first row Show all	>Lus10042719 pacid=23181870 polypeptide=Lus10042719 locus=Lus10042719.g ID=Lus10042719.BGIv1.0 annot-version=v1.0 ATGGAAAAGAGGAATTGGCTGTGGAAGAAGAAACCCTCAGAGAAGGGCACTGGAGAAAGTGACAGTTCAGGAGGTGCTTCTGCATCCTCCCATTCAGAGA GATTCTCAGATGATCAGGAAGCACTGAAAGCATCTCCTTGCCACGACAGTCAGTCACCTGAAGTCACGTCGAAAACTTCAGCTGTAGATGAAGAAGCTAA TGACAGCACCACCAAATGTTTAAAAGAGAAGCTGGCAGTTGCACTTGTGAACATGAGTGAAAAAGATGATTTGGTAAAGCAACACTCCAAGGTTGCTGAA GAAGCTGTTGCAGGCTGGGAAAAGGCTGAAAATGAAGTAGAGGTTCTTAAGAAACAGCTTGAAGCTGCAACGAAACAGAAATCTATACTCGAAGACCGTG TTAGCCATGTCGATGGAGCCCTCAAGGAGTGCGTTAGGCAACTACGACAAGCTCAGGAGGAGCAGGAAGTAAAGATACGCCAGGCAGTGGAAAATAAAAG CAAAGGATGGGAATCCATTAAATCTGAACTAGAACAACAGATTTTCGAGCTCAAGACAGAAGTTGCTGCAAAGCCTGAGGAGTCACTTGCTCGAGTTGAT CTGGATCTCTATCGCAGGTTTGAATATCTGCAAGAAGAGAATGAATCAATGAGGCTGGAGCTTTTGTCTCAATCTGAAGAATTAGAAGTTAGAACAATTG AAAGGGACTTGAGTACTCAAGCAGCTGAAACGGCCAGCAAGCAACATTTAGAGAGCATAAAGAAGTTGGCAAAGCTTGAAGCCGACTGCCGAAGACTAAA AGCTGTAGCTTGTAGATCATCATCACCATCCTCACTTAATACTGATCATAAAAACTCGGCTGCTTCCTCGATTTATGTCGAGCCTCTCACGGATAGCAAT TCATCAGCTGTTGAAATTGATCTCATGGATGATTTTCTTGAAATGGAAAGACTAGCTGCAATGCCCGAGACCAAAAGTGGAAGAAGTACTCGTCTCAAAT CGGAAGTTGAGCTTGAGATGGCTATTCTTCAGAGAGAAGAGTTGGAATGCAAGCTGAATGAGCTGCAAGAAGTGAATGATGGACTAAAACAAAGTTCGGA GAACATGAAAGAGGAGAAATCTGAAGTGGAATTTTGTCTAGAGAAAACGATGGCAGAGAAAGCACAAGTTGAAAGATGGTTAGAAGAAATGGAAGCAGAA AAAGGTGAACTGGAATTGTGTTTAGAGAGAACGATAGCAGAGAAAGCACAAGTGGAAAGAAATTTAGAAGAAATGGTTGCTCAAAAGGCTAAAGTGGAAT TATGTCTAGAGAAAATGATAGCAGAGAAAGCACAAGTCGAAAGAAACTTAGAAGAAATGGAAGCAGAAAAGGGTGAAGTGGAACTATGTCTGGAGAAAAT CGTAGCAGAGAAGGGACAAGTGGAAAGAAGTTTAGTAGAAATGGAAGCAGAGAAAACCCAACTCGAAACTTCCCTAACCAAAGCTGAAGATGAGAAAATA GTATCTGAAACTCGGGTAATGGAAGTCGAACTGAAGCTGGATGAAGTCCAAACCCTCCTATTATCAACGAAAGAATCGAAGCAGGAGATTGAGTTTCAGT TGATTGGCTTGGAAGCAGAATGTCGTACGTTGTCAGTAGAGGTTGTCAGCTTGGAATCCGAGCTTGAGAAGGAAAGGGCTATGTCGGTCGAGTTGAGTAT CAAGTTTCAGTACATGGAGGAAGAACTTGGTAGAATGCAGGACCAATTTGAGTACCAGCAATCCATTAGCTTGAACAGTGCTCCAAAGATAAAGCAGGAG GACTTAGCGTTGGCAGCTGGGAAGCTTGCTGAGTGCCAGAACACAATACTGTCCCTTGGAAATCAACTCAAGTCTCTAGCATCGATTGAGGACTTCTTGA TTGACAGCAGCATACCTGAAATCTCAGTAACAAATTGTTGTCCGTCTCCTGGAGGTAGTGGAGAACTGTGGAAGCTGCATTGTAATGGAACATTCTCTCC CAAGATAGGTTCAACTTCTTCTTCTTCTTCTAGAGTCGCTGTAGGGAGTCCTGGTCCTTCACAGAGTAAGCATGATCATCGCAGCTCGCCACCAGTTTCA TCGACTTCGTCTTCTGTGGTGCATAGTGCAAGTTCTGATAAGAACAGAAATGGGTTTGCCAGTTTTTTCTCAAGGAGCAAGAACGGTATTCAGCTGGAAC TTTAG
AA sequence Show only first row Show all	>Lus10042719 pacid=23181870 polypeptide=Lus10042719 locus=Lus10042719.g ID=Lus10042719.BGIv1.0 annot-version=v1.0 MEKRNWLWKKKPSEKGTGESDSSGGASASSHSERFSDDQEALKASPCHDSQSPEVTSKTSAVDEEANDSTTKCLKEKLAVALVNMSEKDDLVKQHSKVAE EAVAGWEKAENEVEVLKKQLEAATKQKSILEDRVSHVDGALKECVRQLRQAQEEQEVKIRQAVENKSKGWESIKSELEQQIFELKTEVAAKPEESLARVD LDLYRRFEYLQEENESMRLELLSQSEELEVRTIERDLSTQAAETASKQHLESIKKLAKLEADCRRLKAVACRSSSPSSLNTDHKNSAASSIYVEPLTDSN SSAVEIDLMDDFLEMERLAAMPETKSGRSTRLKSEVELEMAILQREELECKLNELQEVNDGLKQSSENMKEEKSEVEFCLEKTMAEKAQVERWLEEMEAE KGELELCLERTIAEKAQVERNLEEMVAQKAKVELCLEKMIAEKAQVERNLEEMEAEKGEVELCLEKIVAEKGQVERSLVEMEAEKTQLETSLTKAEDEKI VSETRVMEVELKLDEVQTLLLSTKESKQEIEFQLIGLEAECRTLSVEVVSLESELEKERAMSVELSIKFQYMEEELGRMQDQFEYQQSISLNSAPKIKQE DLALAAGKLAECQNTILSLGNQLKSLASIEDFLIDSSIPEISVTNCCPSPGGSGELWKLHCNGTFSPKIGSTSSSSSRVAVGSPGPSQSKHDHRSSPPVS STSSSVVHSASSDKNRNGFASFFSRSKNGIQLEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77580			Plant protein of unknown funct...		Lus10042719 [exp]	0	1
AT3G48210			unknown protein		Lus10018093 [exp]	1.0	0.9022
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10009653 [exp]	2.8	0.8899
AT1G77580			Plant protein of unknown funct...		Lus10029679 [exp]	8.8	0.8936
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10018724 [exp]	9.6	0.8251
AT2G26760		CYCB1;4, CYC3	Cyclin B1;4 (.1)		Lus10036080 [exp]	10.4	0.8971
AT3G25980		MAD2	MITOTIC ARREST-DEFICIENT 2, DN...		Lus10006436 [exp]	11.8	0.8809
					Lus10011118 [exp]	12.4	0.8396
AT1G19080		PSF3, TTN10	TITAN 10, Partner of SLD5 3, G...		Lus10014848 [exp]	12.4	0.8745
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Lus10006511 [exp]	13.9	0.8681
AT4G24820			26S proteasome, regulatory sub...		Lus10027348 [exp]	18.7	0.8315

Compare expression of checked genes

Lus10042719 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.