Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21750 683 / 0 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT1G77510 676 / 0 ATPDI6, ATPDIL1-2 PROTEIN DISULFIDE ISOMERASE 6, PDI-like 1-2 (.1) AT5G60640 204 / 4e-57 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT3G54960 199 / 2e-55 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT1G52260 159 / 2e-41 ATPDI3, ATPDIL1-5 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1) AT3G16110 156 / 2e-40 ATPDI4, ATPDIL1-6 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) AT1G35620 101 / 2e-22 ATPDI8, ATPDIL5-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) AT2G47470 97 / 3e-22 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT2G32920 79 / 3e-15 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1) AT1G04980 78 / 5e-15 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029681 [exp] 914 / 0 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10018156 [exp] 790 / 0 AT1G21750 710 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10025679 [exp] 563 / 0 AT1G21750 482 / 8e-169 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10015305 [exp] 228 / 5e-70 AT1G21750 189 / 1e-57 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10037403 [exp] 227 / 2e-65 AT5G60640 729 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10022581 [exp] 199 / 3e-55 AT5G60640 741 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10021478 [exp] 198 / 6e-55 AT5G60640 740 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10029682 [exp] 161 / 7e-47 ND / Lus10035870 [exp] 169 / 7e-45 AT1G52260 632 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G082100 [exp] 721 / 0 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.005G179000 [exp] 701 / 0 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.009G013600 [exp] 240 / 3e-70 AT5G60640 712 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Potri.001G183500 [exp] 169 / 5e-45 AT3G16110 650 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) Potri.013G111400 [exp] 108 / 4e-25 AT1G35620 533 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.019G082400 [exp] 108 / 4e-25 AT1G35620 549 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.014G122800 [exp] 98 / 6e-22 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.008G040100 [exp] 99 / 1e-21 AT3G54960 288 / 7e-92 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.002G198300 [exp] 97 / 1e-21 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.010G222100 [exp] 84 / 6e-17 AT3G54960 275 / 2e-87 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10042721 pacid=23181769 polypeptide=Lus10042721 locus=Lus10042721.g ID=Lus10042721.BGIv1.0 annot-version=v1.0 ATGGCCCATTGGATAAACAAGGCATACCAAAAGGACGTCGAAGAGCTGGAGCTGAATTTCAACCATGACTTAGAGCAGTTCAGGGTGACATCCGACCTCA TGTTACAAATCAAGACCCTTAAGGCCCTCAATGTGGTGTACATAGATATAGGGTCACCAAACAATGATTTTGTGGTCACCGGGCGTAGATTCCTCAAGAT CTGCTCGATGAAGAAGGCGAGTATCGAAGTGGTCATGCTCAATCTCCTGCTGAAAAGCTGCACGGAGCTCGAGACTCTCGATATCATCAAGTGTTACACT CCCATTCAGGTAAGATTTTCGGCCAAAAGTCTGGATAAACAAGGCGTCCCAAAAGGACGTCGAAGAGCTGGAGCTCAATTTCGACATGACTTAGAGCTGT TCAGGGTGACATCCGACCTCATATTCCAAATCAAGACCCTTGAGGCCCTTCATGTGGTGTACATCGATATAGGGTCACCAAACAATGATTTTGTGGTCAC CGGGCGTAGATTCCTCAAGATCTGCTCGATGAAGAAGGCGAATATCGAAGTGGTCATGCTCGATGTCCTATTGAAAAGCTGCACGGAACTCGAGACTCTC GAGATCATCAAGTGTTACACTCCCATTCAGTTTAAAGACAGTGGCAATCTTCAGAGGCCTTGCCATGCCGTTGGAGAGGCGGCTGCCGAGTCCAAGGAGT TCGTGCTCACCCTTGACCACTCCAATTTCACTGATACTGTCAGCAAGCACGAATTCATCGTCGTCGAGTTTTACGCTCCTTGGTGTGGCCACTGTAAGAA CCTAGCTCCAGAGTATGAGAAAGCTGCGTCAGCGTTGAGCAGTCATGATCCTCCGATCGTGTTGGCCAAAGTAGATGCCAGCGACGCTGTCAACAAAGAT CTTGCCGCAGAGCATGATATTAAGGGATTCCCATCCCTGAAAATTTTCAGAAATGGGGGGAAGTTGGTTCAGGAGTTTAAAGGTCCTCGTGAAGCAGACG GTATCGTTGAGTATTTGCATAAACTGACTGGTCCTGCTTCAGTTGAAATCAAATCAGCAGAAGATGCCAGCGATTTTGATGAAACTAAGATATTTATCGT TGGTGTGTTCCCTAAGTTCTCTGGCCCAGAGTTCGAAAACTACTTAGCTTTGGCTGAGAAGTTGCGATCAGACTATGACTTTGGTCATACCTCAGATGCC AAATTCCTTCCTCGTGGTGAATCCTCGGTGACTGGACCACTGGTTAGGTTGTTCAAGCCATTTGATGAACTCTTCGTTGATTCTAAGGATTTTGATGTGG ATACTCTGGAGAAGTTTGTTAAGGACTCTAGCATACCCATCGTGACTATATTCAATAGCGACCCGAAAAATCACCCATATGTCATCAAGTACTTCGACAG TAATGATGTCAAGGCTATGTTGTTTGCGAACTTCACCAATGATGTTAGTGATTCTTTCAAGTCCAAGTTCCGGGAAGTTGCCGAGCAATACAAGGGTCAA GGTCTGATCTTTCTGCTTGGAGATGCTGACTCTAGTCAAGGTGCCTTCCAGTTCTTCGGACTTAAAGAAGAGCAAGTGCCCCTCCTTATCGTACAAACAG TTGACGGACAGAAGTATTTGAAGGCAAACTTGAATCCCGAGGATATCGCTCCTTGGCTCAAGGATTACAAGGAAGGCAAAGTTCCAGCATACAAAAAATC CGAACCCATTCCCGAGACAAACAACGAGCCTGTGAAAGTAGTTGTTGCTGATACACTTGATGAAGTAGTTTTCAACTCTGGGAAAAATGTCCTTGTCGAG TTCTACGCTCCATGGTGTGGACACTGCAAGAAACTGGCACCAATTCTGGACGAAGTTGCTGTTTCCTATGAGAATGATGCTAGTGTGCTCATTGCAAAAC TAGATGCTACTGCGAACGATATCCCCAGTGACAAATTCGACGTGCAAGGATACCCGACACTGTACTTCCGTTCGGCGAGCGGGACCTTGGAGTCATATGA AGGGGATCGAACTAAAGAAGACATCATCGACTTCATTGAGAAGAATAGAGATAAACCAGCAGCTTCCAAAGACCAACAGCAGGAGAAGGAGAAGGAGGAG GAGGAGGAACCCACTAAAGATGAGCTCTAA
AA sequence Show only first row Show all	>Lus10042721 pacid=23181769 polypeptide=Lus10042721 locus=Lus10042721.g ID=Lus10042721.BGIv1.0 annot-version=v1.0 MAHWINKAYQKDVEELELNFNHDLEQFRVTSDLMLQIKTLKALNVVYIDIGSPNNDFVVTGRRFLKICSMKKASIEVVMLNLLLKSCTELETLDIIKCYT PIQVRFSAKSLDKQGVPKGRRRAGAQFRHDLELFRVTSDLIFQIKTLEALHVVYIDIGSPNNDFVVTGRRFLKICSMKKANIEVVMLDVLLKSCTELETL EIIKCYTPIQFKDSGNLQRPCHAVGEAAAESKEFVLTLDHSNFTDTVSKHEFIVVEFYAPWCGHCKNLAPEYEKAASALSSHDPPIVLAKVDASDAVNKD LAAEHDIKGFPSLKIFRNGGKLVQEFKGPREADGIVEYLHKLTGPASVEIKSAEDASDFDETKIFIVGVFPKFSGPEFENYLALAEKLRSDYDFGHTSDA KFLPRGESSVTGPLVRLFKPFDELFVDSKDFDVDTLEKFVKDSSIPIVTIFNSDPKNHPYVIKYFDSNDVKAMLFANFTNDVSDSFKSKFREVAEQYKGQ GLIFLLGDADSSQGAFQFFGLKEEQVPLLIVQTVDGQKYLKANLNPEDIAPWLKDYKEGKVPAYKKSEPIPETNNEPVKVVVADTLDEVVFNSGKNVLVE FYAPWCGHCKKLAPILDEVAVSYENDASVLIAKLDATANDIPSDKFDVQGYPTLYFRSASGTLESYEGDRTKEDIIDFIEKNRDKPAASKDQQQEKEKEE EEEPTKDEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10042721 [exp]	0	1
AT5G04600			RNA-binding (RRM/RBD/RNP motif...		Lus10007730 [exp]	10.6	0.7490
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10032198 [exp]	12.0	0.7314
AT4G28450			nucleotide binding;protein bin...		Lus10037378 [exp]	17.7	0.7117
AT2G33630			NAD(P)-binding Rossmann-fold s...		Lus10013202 [exp]	19.9	0.6909
AT5G04600			RNA-binding (RRM/RBD/RNP motif...		Lus10018666 [exp]	20.2	0.7250
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10036017 [exp]	20.3	0.7305
AT1G55040			zinc finger (Ran-binding) fami...		Lus10031502 [exp]	21.9	0.6746
AT1G79050			recA DNA recombination family ...		Lus10042462 [exp]	24.5	0.6874
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10029681 [exp]	25.9	0.5923
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10015974 [exp]	28.2	0.6264

Compare expression of checked genes

Lus10042721 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.