Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21740 618 / 0 Protein of unknown function (DUF630 and DUF632) (.1) AT1G77500 530 / 1e-178 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 270 / 2e-79 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT2G17110 241 / 1e-69 Protein of unknown function (DUF630 and DUF632) (.1) AT5G54480 176 / 9e-47 Protein of unknown function (DUF630 and DUF632) (.1) AT1G20530 157 / 2e-40 Protein of unknown function (DUF630 and DUF632) (.1) AT2G27090 151 / 3e-38 Protein of unknown function (DUF630 and DUF632) (.1) AT3G51290 141 / 9e-35 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT1G02110 130 / 2e-31 Protein of unknown function (DUF630 and DUF632) (.1) AT4G39790 129 / 4e-31 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029683 [exp] 1162 / 0 AT1G21740 696 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10023949 [exp] 311 / 2e-97 AT4G35240 655 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10014445 [exp] 308 / 5e-94 AT4G35240 712 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10025077 [exp] 202 / 3e-55 AT4G35240 237 / 3e-66 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10024007 [exp] 195 / 6e-53 AT1G21740 238 / 1e-66 Protein of unknown function (DUF630 and DUF632) (.1) Lus10024039 [exp] 160 / 2e-41 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10041710 [exp] 155 / 2e-39 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10015534 [exp] 148 / 2e-37 AT2G19090 480 / 4e-160 Protein of unknown function (DUF630 and DUF632) (.1) Lus10028431 [exp] 135 / 5e-33 AT3G51290 728 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G082000 [exp] 783 / 0 AT1G21740 644 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G179100 [exp] 762 / 0 AT1G21740 617 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G070200 [exp] 310 / 4e-95 AT1G21740 315 / 3e-94 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G142900 [exp] 301 / 2e-91 AT4G35240 621 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.004G182900 [exp] 299 / 2e-90 AT4G35240 639 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.005G249400 [exp] 226 / 5e-65 AT1G20530 359 / 9e-116 Protein of unknown function (DUF630 and DUF632) (.1) Potri.002G011700 [exp] 214 / 2e-60 AT4G35240 348 / 5e-109 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.004G177200 [exp] 211 / 5e-59 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G108400 [exp] 210 / 2e-58 AT1G21740 231 / 4e-64 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G137500 [exp] 194 / 9e-53 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [flax] [poplar] DUF632 Protein of unknown function (DUF632)
Representative CDS sequence Show only first row Show all	>Lus10042722 pacid=23181734 polypeptide=Lus10042722 locus=Lus10042722.g ID=Lus10042722.BGIv1.0 annot-version=v1.0 ATGAGGGAGCCGAGTCCACAGAAGCCTCCGCCGGCACCACCGTCTCCGCCGAGGGCGTCCACTTGGGATTTTCTTAACGTGTTTGAATCAGTTGACAATG GTGGTGCCGGCGGCGGCGGATTTCATGGCTATCACACGTCGGATAGGTATGTGTACGGATCAATCACGAGTAGTCCTGATTCTAGAGAAGTCAGAGAAAG GGAAGGGATTCCTGATTTGGAGGATGAGACGGAGCATGAGGTGATCAAGGAAGTTCCCAGAGAGAAGAAGAGAATGAATGAAGAGCGATCAGGAGTGAAT AATAACAATGGGAAATCCAGATTCAATGAGGAGTTCTTGCACAATAATTATGGGGAAGGGACCTCCAAGCCTGTGGCGGTTGGTACCAGCAGTAGCAGCA TTGAGAGTATTGAATTATCTATGAGAGGCAGAAGGAATTCGAGTAAAGGTAAAGGAATCAAGACAAGTATGAGCCCTGATACGATTCCTAGTCCGGATAG CATTGTCTCCATCAGTCCCCCCCAGGAAGAGGAACTTGTGAAGAGGAAGAAAGGCGTGAGCTTTGAGGTGGTGGAGGAGGCGGCATCTAGTGTCGCCATG GATGTTGAATCCGAGAAACCAAATATCAGTATGAATAATGCATTGTCGGCTCATGGAACTAGAGACATTCAAGAAGTGGTGAAAGAAATCAGGGATGAGT TTGAGACGGCCACCAATTATGGGAAGGAGATTGCATTTATGCTCGAAGTCAACAAACTGCCTTACCAAAGGCAAACTACACCACTTAAAGTGTTACTCTT GAGAATTCTATCTATGAAAGCTCAAGCCAAGTCATCAGTTCAAATTTCTTCCAGAGTTATGAAGATTGCAAAGATGTACTCTGAACAGACTGTAAATGAG TTTGATATTCATCCCGTAAATCTTTCATCCACTCTTGCAAAGCTTTATGCGTGGGAAAAGAAACTTTACAAGGAGGTTAAGGAAGAAGAGAGGCTGCGGG TTATATATGAAAAGGAGTGCAAGAGACTAAAACTTTTAGATGAGCGTGGTGAAGAGTCTAGTAAAATTGAGGCCACACAGGATTCGATACGGAAGTTAAT GACAAAACTCAATGTTTGTGTCAGAGCTGTTGATTCAATATCTGTCAAGATACACCAGCTACGGGATGAGGAGTTGCAACCCCAAATTACAGCGTTGATT CATGGGTTGATACGGATGTGGAGGACGATGCTGAGATGTCATCAGAAACAGTTCCAAGCTATAATGGAGAGCAAAGTCCGGTCTCTCAAGGCAAACACAC TGCAGAGAGATTCAGGCTTAAAAGCTACTCTAGAGCTTGAAATGGAGCTTGTGGATTGGTGTTCTCGCTTCAGCAATTGGATCAAGACCCAGAAATCTTA TGTCGAGTCCTTAAATAAATGGCTTTTGAAGTGCATCAACCAAGAACCTGAAGAAACTGCTGATGGAGTTGCACCATTCTCCCCAAGTAGGATCGGAGCT CCGTCCATTTTCGTGATATGCAATGATTGGTACGAAGGAATGCTTAGGGTTTCCGAGAAAGGGGTGGAAAACGCAATGCTCGACTTCGCATCCAACTTGC AGCAGCTATGGGAACGGCAAGATCAGGAACAGCGGCAGCGAATCAAAACCGAGTACCTGAAAAAGGATCTCGAGAAACAGCTCAAAACGTTGAGAATGGA GAGGGGGAAGAGAAGTGATGAGAAGCTCGAGCAAGATGCTGGATCATCGGATAAAGCAGTGTCCAAGGTTCCTTCTGACAGCGGTGTTTCGCCATTAGAT GACCTGAAAGTGGACTTGGATTCGATGAGAAAGAAGTTAGATGAAGAGAGAGCTAGGCACAAGGAGACGGCTAAGCTGGTTCATGATGCAGCTTCTAGTA GCCTGCAAGCTGGTTTGCTTCCGATTTTTGAGGCTCTGGGCAGTTTCACCTCAGAAATTTTGAAAGTTCATGAGGATGTTAGACTTGTGGAGGGAACCTC TTAG
AA sequence Show only first row Show all	>Lus10042722 pacid=23181734 polypeptide=Lus10042722 locus=Lus10042722.g ID=Lus10042722.BGIv1.0 annot-version=v1.0 MREPSPQKPPPAPPSPPRASTWDFLNVFESVDNGGAGGGGFHGYHTSDRYVYGSITSSPDSREVREREGIPDLEDETEHEVIKEVPREKKRMNEERSGVN NNNGKSRFNEEFLHNNYGEGTSKPVAVGTSSSSIESIELSMRGRRNSSKGKGIKTSMSPDTIPSPDSIVSISPPQEEELVKRKKGVSFEVVEEAASSVAM DVESEKPNISMNNALSAHGTRDIQEVVKEIRDEFETATNYGKEIAFMLEVNKLPYQRQTTPLKVLLLRILSMKAQAKSSVQISSRVMKIAKMYSEQTVNE FDIHPVNLSSTLAKLYAWEKKLYKEVKEEERLRVIYEKECKRLKLLDERGEESSKIEATQDSIRKLMTKLNVCVRAVDSISVKIHQLRDEELQPQITALI HGLIRMWRTMLRCHQKQFQAIMESKVRSLKANTLQRDSGLKATLELEMELVDWCSRFSNWIKTQKSYVESLNKWLLKCINQEPEETADGVAPFSPSRIGA PSIFVICNDWYEGMLRVSEKGVENAMLDFASNLQQLWERQDQEQRQRIKTEYLKKDLEKQLKTLRMERGKRSDEKLEQDAGSSDKAVSKVPSDSGVSPLD DLKVDLDSMRKKLDEERARHKETAKLVHDAASSSLQAGLLPIFEALGSFTSEILKVHEDVRLVEGTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21740			Protein of unknown function (D...		Lus10042722 [exp]	0	1
AT1G77500			Protein of unknown function (D...		Lus10042723 [exp]	1.0	0.8894
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Lus10011693 [exp]	2.4	0.8880
AT1G21740			Protein of unknown function (D...		Lus10029683 [exp]	6.5	0.8007
AT5G50170			C2 calcium/lipid-binding and G...		Lus10015665 [exp]	15.7	0.7440
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Lus10009494 [exp]	18.4	0.8392
AT5G50170			C2 calcium/lipid-binding and G...		Lus10037679 [exp]	23.1	0.7097
AT5G63920		TOP3A, AtTOP3al...	topoisomerase 3alpha (.1)		Lus10004959 [exp]	24.9	0.8550
AT2G38620		CDKB1;2	cyclin-dependent kinase B1;2 (...		Lus10035614 [exp]	26.7	0.7990
AT2G46380			Protein of unknown function (D...		Lus10005153 [exp]	28.6	0.8073
					Lus10004928 [exp]	29.7	0.7052

Compare expression of checked genes

Lus10042722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.