Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44170 540 / 0 ALDH4, ALDH3H1 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) AT4G34240 453 / 5e-157 ALDH3I1 aldehyde dehydrogenase 3I1 (.1.2) AT4G36250 335 / 9e-112 ALDH3F1 aldehyde dehydrogenase 3F1 (.1) AT3G66658 110 / 3e-26 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT1G74920 105 / 9e-25 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT1G79440 103 / 6e-24 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT3G48170 97 / 5e-22 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT1G23800 90 / 3e-19 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT3G24503 88 / 8e-19 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) AT3G48000 82 / 1e-16 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029684 [exp] 658 / 0 AT1G44170 742 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10025681 [exp] 613 / 0 AT1G44170 743 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10018153 [exp] 607 / 0 AT1G44170 734 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10015688 [exp] 462 / 5e-161 AT4G34240 674 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Lus10037694 [exp] 451 / 1e-148 AT3G02850 659 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10041806 [exp] 335 / 2e-111 AT4G36250 640 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10028357 [exp] 325 / 9e-108 AT4G36250 635 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10031280 [exp] 322 / 8e-107 AT4G36250 555 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10031849 [exp] 322 / 1e-106 AT4G36250 550 / 0.0 aldehyde dehydrogenase 3F1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G179300 [exp] 569 / 0 AT1G44170 736 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Potri.002G081800 [exp] 547 / 0 AT1G44170 731 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Potri.001G412900 [exp] 485 / 7e-170 AT4G34240 678 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Potri.005G069800 [exp] 484 / 3e-169 AT4G34240 626 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Potri.001G259100 [exp] 340 / 9e-114 AT4G36250 556 / 0.0 aldehyde dehydrogenase 3F1 (.1) Potri.007G017100 [exp] 327 / 2e-108 AT4G36250 635 / 0.0 aldehyde dehydrogenase 3F1 (.1) Potri.012G075600 [exp] 105 / 1e-24 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.008G106000 [exp] 105 / 2e-24 AT3G66658 1049 / 0.0 aldehyde dehydrogenase 22A1 (.1.2) Potri.015G070600 [exp] 100 / 3e-23 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.010G174000 [exp] 100 / 8e-23 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Lus10042724 pacid=23181949 polypeptide=Lus10042724 locus=Lus10042724.g ID=Lus10042724.BGIv1.0 annot-version=v1.0 ATGATAAAGAACGCATGTAAAGTGGCAATTAAGGAACTGAAGAACTGGATGAGACCAGAGAAGGCAAAAACCTCAGTGACGACTTTTCCTTCATCAGCTG AAATTGTGTCTGAGCCATTTGGAGTTGTATTGATAATTTCTGCATGGAATTATCCTTTCCTGCTGTCCATTGATCCAGTAGTTGGAGCTATAGCAGCTGG GAATGCTGTCGTCTTGAAACCATCAGAGTTAGCTCCAGCTTCATCATCATTGCTTGCAAAACTGTTTGCAAAGTATTTGGATAATTCTTCAATAAGGGTT GTTGAGGGCGCTGTAGCTGAAACAACAGCTTTACTAGAGCAAAAATGGGACAAAATAATGTATACAGGAAACAGCAGAGTTGGGCGTATTGTGATGACTG CTGCTGCAAAGCACTTAACTCCTGTCATTATGGAGCTTGGGGGAAAATGTCCAGTGGTTGTTGATTCAGACATTGATTTACAGGTTGCAATTAGACGAAT TATCGTAGGCAAGTGGGGCTGTAACAATGGACAAGCATGCATATCCCCAGATTACATTTTAACAACCAAAGATTATGCACCAAAGCTGGTTAATGCTTTA AAAACAGAACTCGAGGGATTTTATGGGAAGAATCAACTGGATTCGAAGGATTTGTCTCGTATCGTGAACAGTAACCATTTCTCTAGGCTATCAAAGCTAC TGGATGATGAGAAGGTTTCTGGTAAAATTGTCTATGGCGGCGAAAGAGACGATGTCAATCTGAGAATCGCTCCAACCATTCTGCTAGATGTTCCGAGGGA TTCCTTGATCATGAATGAAGAGATATTTGGCCCCTTGCTTCCCATCCTCACGTTGAACAATATCGACGAGAGCTTCGATGTGATAAACTCGGGAACAAAG CCGCTAGCAGCCTATATATTCACCAACAACAAGAAGCTCAAGGAAAAGTTTGTAATGTCGGTCTCTTCAGGGGGGATTGTCGTTAACGACACTACACTTT ATGGGAAGTTCTCATTTGATGCCTTCAGCCACAAGAAAGCGGTTGTCTACCGGAGTTTCACAGCTGATGCTTCCTTGAGGTACCCACCATACACAAGCTT CAAACTAAGATTGATGAAAGCTCTAAATGAACGGCAGTTTCCCTGA
AA sequence Show only first row Show all	>Lus10042724 pacid=23181949 polypeptide=Lus10042724 locus=Lus10042724.g ID=Lus10042724.BGIv1.0 annot-version=v1.0 MIKNACKVAIKELKNWMRPEKAKTSVTTFPSSAEIVSEPFGVVLIISAWNYPFLLSIDPVVGAIAAGNAVVLKPSELAPASSSLLAKLFAKYLDNSSIRV VEGAVAETTALLEQKWDKIMYTGNSRVGRIVMTAAAKHLTPVIMELGGKCPVVVDSDIDLQVAIRRIIVGKWGCNNGQACISPDYILTTKDYAPKLVNAL KTELEGFYGKNQLDSKDLSRIVNSNHFSRLSKLLDDEKVSGKIVYGGERDDVNLRIAPTILLDVPRDSLIMNEEIFGPLLPILTLNNIDESFDVINSGTK PLAAYIFTNNKKLKEKFVMSVSSGGIVVNDTTLYGKFSFDAFSHKKAVVYRSFTADASLRYPPYTSFKLRLMKALNERQFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10042724 [exp]	0	1
AT2G05630		ATG8D	Ubiquitin-like superfamily pro...		Lus10027186 [exp]	1.4	0.9522
AT2G38370			Plant protein of unknown funct...		Lus10009099 [exp]	5.3	0.9376
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10032274 [exp]	6.2	0.9343
AT4G24400		ATCIPK8, PKS11,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10032822 [exp]	6.5	0.9291
AT5G27210			Protein of unknown function, t...		Lus10018984 [exp]	7.1	0.9151
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Lus10010838 [exp]	7.1	0.9202
AT5G51680			hydroxyproline-rich glycoprote...		Lus10038900 [exp]	10.6	0.9147
AT2G32070			Polynucleotidyl transferase, r...		Lus10017123 [exp]	11.6	0.9265
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10024140 [exp]	12.6	0.9314
AT4G39870			TLD-domain containing nucleola...		Lus10041697 [exp]	14.5	0.9263

Compare expression of checked genes

Lus10042724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.