Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11040 249 / 1e-77 HSP40/DnaJ peptide-binding protein (.1) AT1G44160 217 / 2e-66 HSP40/DnaJ peptide-binding protein (.1) AT3G08910 171 / 2e-49 DNAJ heat shock family protein (.1) AT5G25530 171 / 4e-49 DNAJ heat shock family protein (.1) AT5G01390 167 / 1e-47 DNAJ heat shock family protein (.1.2.3.4) AT1G10350 166 / 3e-47 DNAJ heat shock family protein (.1) AT2G20560 166 / 4e-47 DNAJ heat shock family protein (.1) AT4G28480 164 / 3e-46 DNAJ heat shock family protein (.1.2) AT1G59725 160 / 3e-45 DNAJ heat shock family protein (.1) AT3G47940 160 / 7e-45 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029685 [exp] 565 / 0 AT1G11040 257 / 1e-80 HSP40/DnaJ peptide-binding protein (.1) Lus10025682 [exp] 342 / 9e-114 AT1G11040 241 / 4e-75 HSP40/DnaJ peptide-binding protein (.1) Lus10018152 [exp] 341 / 1e-113 AT1G11040 246 / 5e-77 HSP40/DnaJ peptide-binding protein (.1) Lus10015402 [exp] 164 / 4e-46 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1) Lus10036668 [exp] 164 / 4e-46 AT3G47940 454 / 6e-161 DNAJ heat shock family protein (.1) Lus10017687 [exp] 161 / 2e-45 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10027803 [exp] 161 / 2e-45 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10005033 [exp] 161 / 3e-45 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10013981 [exp] 161 / 4e-45 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G081700 [exp] 293 / 8e-96 AT1G11040 253 / 1e-80 HSP40/DnaJ peptide-binding protein (.1) Potri.005G179400 [exp] 272 / 1e-87 AT1G11040 250 / 2e-79 HSP40/DnaJ peptide-binding protein (.1) Potri.001G211800 [exp] 211 / 2e-64 AT1G11040 197 / 2e-59 HSP40/DnaJ peptide-binding protein (.1) Potri.011G057601 [exp] 176 / 8e-51 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 171 / 4e-49 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 167 / 7e-48 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.007G135900 [exp] 164 / 9e-48 AT2G20560 248 / 6e-82 DNAJ heat shock family protein (.1) Potri.007G135800 [exp] 161 / 1e-46 AT2G20560 261 / 6e-87 DNAJ heat shock family protein (.1) Potri.007G136133 [exp] 162 / 2e-46 AT2G20560 260 / 2e-85 DNAJ heat shock family protein (.1) Potri.007G136600 [exp] 161 / 3e-46 AT2G20560 261 / 6e-87 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10042725 pacid=23182023 polypeptide=Lus10042725 locus=Lus10042725.g ID=Lus10042725.BGIv1.0 annot-version=v1.0 ATGGTAGAAGAAGATCACAATCATCGTCATTCTCAGCATCATCGCATTGGTTCCACGTCTAATGTTGATTGCAATGAACATTATTATCATAAGGTTAACA AGAAGAAGACAAATATTCCGGCCAAGACGAGGCCTTTGAAAATTAAGGATTTCTTAAGGATTTACGGTCATGTTATTGCGAGATTAAATCGTATTACGAG TTTTTCCTTTTCTCCCCCCAAATCATCATCTCCTTCTTCTACGTCTAAATGTGATCTACAGGATAGTAGAGTTGAATTCCAAAGGCAACCTGTTGAAGAA GTAGATATCAACACAATGAATGGAATCCACAGCCTAAGGTATAACCCACCAGACAATCCGAGCACCACATCAGCAACAACTCCAAACAGCTTCTTCAAGC AGAAAACCAAAGACGACATCCTCCGAACCATAACATCCCCTCTCTCCAGAATCACTAGCAGAAGAAGCCCTTCTCCTTCCTCAAGAACATCCTCCTCCTC CTCTTCTTCCTCCCTTTCGAAAAGCGCCACCAGACGTAGCATATCTCCATTGTCGACCTTCGTCCACAAATGCATCACCGGTCGAAAAAGCAGCAGCGTA GATCATGATCACTCCTCCCCTGCTACGGCTCCATCCACATTGTCCAGGAACAATACCACTAGTACTAATACTACTAGTACCAACAAGGCATCAGCAGCTT CATCACTTACTAGAGACGTCAGCCGGAAAAGCAATGCCTCCAGTGCTACTAGTACTGCTCCAAGCCCTGTGTTCTCCAGGAACCCTAGTGAGCGAAGCAC TACGCCGATCATGTTCTCCAACTCCACTGGCCGGAAGGTGAAGCCTCCGCCGGTGCAGAAGAACCTCGAGTGCACACTCGAGGAGTTGTTCTATGGTTGC ACCAAGAAGGTCACGGTTACTAGAGATGTCCTCACTGATAGAGGGCAGATAGTTAAGGAAGAGGAGATACTATCAATCGAGGTGAAGCCAGGTTGGAGGA AGGGGACCAAGATAACATTCGAAGGTATGGGGAACGAGAGACCGGGAGCTGAACCGGCAGACGTGACATTCGTGATCGCCGAGAAGCGACACTCGCTGTT TCAACGAGAAGGGGACGACTTGGAGATAGCAGTAGAGATCCCTCTGGTGCAGGCTATCACCGGATGTGACATCTCCATCCCTCTCATGAGCGAAACAGGG GAGACCATGAACCTACTGATCCAGGACGTCATTTCCCCTGGCTACAAGAAGGTCATCCCTGGTCAGGGGATGCCTAAATCCCAACAGGTAAACATGAGAG GGAACCTAAAAGTTACCTTCTTGGTCGAGTTTCCAGCCGAATTGACCGAAGAACAGAGATCACAGGTTGTTAGCATTTTAGAGGGTTCTTCTTGA
AA sequence Show only first row Show all	>Lus10042725 pacid=23182023 polypeptide=Lus10042725 locus=Lus10042725.g ID=Lus10042725.BGIv1.0 annot-version=v1.0 MVEEDHNHRHSQHHRIGSTSNVDCNEHYYHKVNKKKTNIPAKTRPLKIKDFLRIYGHVIARLNRITSFSFSPPKSSSPSSTSKCDLQDSRVEFQRQPVEE VDINTMNGIHSLRYNPPDNPSTTSATTPNSFFKQKTKDDILRTITSPLSRITSRRSPSPSSRTSSSSSSSSLSKSATRRSISPLSTFVHKCITGRKSSSV DHDHSSPATAPSTLSRNNTTSTNTTSTNKASAASSLTRDVSRKSNASSATSTAPSPVFSRNPSERSTTPIMFSNSTGRKVKPPPVQKNLECTLEELFYGC TKKVTVTRDVLTDRGQIVKEEEILSIEVKPGWRKGTKITFEGMGNERPGAEPADVTFVIAEKRHSLFQREGDDLEIAVEIPLVQAITGCDISIPLMSETG ETMNLLIQDVISPGYKKVIPGQGMPKSQQVNMRGNLKVTFLVEFPAELTEEQRSQVVSILEGSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11040			HSP40/DnaJ peptide-binding pro...		Lus10042725 [exp]	0	1
AT1G49180			protein kinase family protein ...		Lus10033518 [exp]	3.9	0.9102
AT4G08240			unknown protein		Lus10009881 [exp]	5.5	0.9136
					Lus10016322 [exp]	5.7	0.8833
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Lus10042035 [exp]	7.6	0.8762
AT4G13400			2-oxoglutarate (2OG) and Fe(II...		Lus10033085 [exp]	12.0	0.9273
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10018987 [exp]	12.2	0.8992
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10002706 [exp]	26.5	0.9054
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10030738 [exp]	26.5	0.8892
AT4G23700		ATCHX17	cation/H+ exchanger 17, cation...		Lus10028747 [exp]	30.9	0.8498
AT5G55530			Calcium-dependent lipid-bindin...		Lus10016592 [exp]	32.1	0.8956

Compare expression of checked genes

Lus10042725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.