Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49600 1272 / 0 SUP32, ATUBP26, UBP26 ubiquitin-specific protease 26 (.1) AT3G11910 132 / 5e-31 AtUBP13, UBP13 ubiquitin-specific protease 13 (.1.2) AT5G06600 131 / 1e-30 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3) AT2G22310 116 / 1e-27 ATUBP4 ubiquitin-specific protease 4 (.1.2) AT4G39910 115 / 3e-27 ATUBP3 ubiquitin-specific protease 3 (.1) AT1G17110 108 / 7e-24 UBP15 ubiquitin-specific protease 15 (.1.2) AT2G24640 102 / 2e-22 UBP19 ubiquitin-specific protease 19 (.1.2) AT3G14400 102 / 7e-22 UBP25 ubiquitin-specific protease 25 (.1) AT5G57990 101 / 1e-21 UBP23 ubiquitin-specific protease 23 (.1) AT5G65450 100 / 3e-21 UBP17 ubiquitin-specific protease 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029686 [exp] 2000 / 0 AT3G49600 1255 / 0.0 ubiquitin-specific protease 26 (.1) Lus10043456 [exp] 132 / 6e-31 AT5G06600 1925 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10008949 [exp] 132 / 9e-31 AT5G06600 1904 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10034130 [exp] 131 / 2e-30 AT3G11910 1888 / 0.0 ubiquitin-specific protease 13 (.1.2) Lus10029309 [exp] 130 / 2e-30 AT5G06600 1957 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10041705 [exp] 116 / 2e-27 AT4G39910 682 / 0.0 ubiquitin-specific protease 3 (.1) Lus10024043 [exp] 116 / 2e-27 AT4G39910 682 / 0.0 ubiquitin-specific protease 3 (.1) Lus10014333 [exp] 107 / 1e-24 AT4G39910 643 / 0.0 ubiquitin-specific protease 3 (.1) Lus10035825 [exp] 105 / 7e-23 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G081600 [exp] 1399 / 0 AT3G49600 1251 / 0.0 ubiquitin-specific protease 26 (.1) Potri.005G179500 [exp] 1388 / 0 AT3G49600 1245 / 0.0 ubiquitin-specific protease 26 (.1) Potri.010G245100 [exp] 130 / 2e-30 AT5G06600 1907 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.008G012600 [exp] 130 / 2e-30 AT5G06600 1909 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.016G064100 [exp] 130 / 2e-30 AT5G06600 1943 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.006G198300 [exp] 125 / 5e-29 AT5G06600 1954 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.007G093600 [exp] 115 / 3e-27 AT4G39910 679 / 0.0 ubiquitin-specific protease 3 (.1) Potri.005G074900 [exp] 114 / 6e-27 AT4G39910 678 / 0.0 ubiquitin-specific protease 3 (.1) Potri.005G156900 [exp] 105 / 1e-22 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1) Potri.001G394600 [exp] 102 / 7e-22 AT3G14400 653 / 0.0 ubiquitin-specific protease 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase CL0125 [flax] [poplar] PF06337 [flax] [poplar] DUSP DUSP domain
Representative CDS sequence Show only first row Show all	>Lus10042726 pacid=23182067 polypeptide=Lus10042726 locus=Lus10042726.g ID=Lus10042726.BGIv1.0 annot-version=v1.0 ATGTCGGTTTTCCTCCTCGCTGTGCACTTGCCTTGTTTGTATCAGCAGCAGATGATCAAGCTTTTCCCGGAAAATCCGGTTTGTGCGAATGCTTGGAGCA AGGAAAATAGTAGGATGAGCAGGCCAACTACACGCAGCAAAAATAAAAGGCACAGATCGGGTGAAAATGTTAATATCACCAGTGAAATATTGAGGAAAAT TCATGCAACTGGAGAATTAACCACTGAAAATGTAAATCAGCTCTATATGATCTTGAAACCTGTCTGCCAAGGCTGCCGTGTGAATACCAAGGATAACCCC AATTGCTTCTGTGGGTTGATTCCAGCTCAAAGCGGGAGTCGGAAGTCCGGGTTATGGCAGAAAACGACAGATATCCTTGAAGCACTTGGATCTGATCCAT CTGATGATCTTCGTGCTGATGACTCTCCAGCCGGTCTCACAAACTTGGGTGCAACATGCTATGCTAATAGCATACTTCAATTTCTGTATATGAATACTGC ATTTAGAGATGGTCTTTTCTCAGTTGAGCCGGAGGTCTTGAAGCAACAACCAGTACTCAATGAAATTGCTCGGCTTTTTGCACGTTTGCATGCCAGTAAA ATGGCTTTTATTGATTCTGCTCCATTCGTAAAGACTCTGGAGTTGGACAATGGGGTGCAGCAGGATAGCCACGAGTTTCTTACATTACTTCTTTCCTTGC TTGAACGTTGTCTTAGCCATTCTAGCATCTCCAAGACAAAATCAATCGTACAAGATCTTTTCCGTGGAAGTGTGTCCCATGAAACAAAGTGCTCAAAGTG TAGTAATGTTTCTGAAGCTTCTTCAAAAATGGAAGACTTTTATGAGCTGGAGTTGAATGTTAAAGGCATGAAAAGCTTGAAGGATAGTTTGGATGACTAC CTTAGTGTGGAGGACCTTGACGGTGATAACCAGTATTTCTGCAGTTCGTGTAACATGAGAGTTGATGCTACACGTAGCATCAAGTTGAGAACACTACCTG CTGTCTTGAATTTTCAGCTTAAGCGTTGCATCTTCCTCCCGAAGACCACCACAAAAAAGAAAATTACATCTGCATTTGGGTTCCCTGAAGAACTTGATAT GGGACAGAGGCTTTGTGAACCGTCTCAGAATGATTGGATCTATAACTTGTCGGCTGTGTTGATCCACAAAGGGTCTGCTGTGAACAGTGGCCATTACATT GCACATATCAAGGATGAAAATACTGGACAGTGGTGGGAGTTTGATGATGAAAGTGTCTCAAATTTGGGTCATCATCCCTTTGGAGAAAGCTCTTCACGTT CCACTGCTGAAATTCTTCCTAGTAAAGTGAATGGAGGACTTGAATTGGGTTCAAATGGAAGTCACTTAGACGCTCAATTGCCTCAACCTTCAGACTCTGA TTCTTCCAGTAATGCCAAGACGTTTTCATCAAGTGATGCATATATGCTGATGTATACTCTTAGGTCTCTACGTAATGCTGATGATAAAACATGTAGGATT AGGGGTGTCAGTAGTGTGGAACTGAAAGGTCAAGGTAGCTCTTCGCATGATGACTTCTTGCCATCTCATCTTTCTGAAGATATTCAGGAACAGAATGCAT CATATGTTAATGCTTGCCAAACGTTCAAAGAAAAAAAGGAAGCTGAGATGCTTCATGTTACTGAGCGAAGACAAGAGGTGAGATCAATTCTTTCTGAAGC TCCTGTTCAATCATTGGGAGAACCTTTTTGCTGGATTTCTACAGACTGGCTTCACCATTGGGCTGATGACTTCACTGCACCTCCCTTGGATAACACATCC ATTCTTTGTTTGCATGGAAAGGTCCCTGTTTCAAAGGTTAGCTCAATGAAACGGTTGTCTTGTGAAGCTTGGGCCAAGTTGTTGTCTAAGTATGGTGGAG GGCCAACACTTACGAATGAGGACTACTGCAAAGCATGCCTTCTTGATGGTGCCAAAACTTTGGTGTCTGTTGATAGCTACCGGGATAGGAGAAAACTAAT GAAGGAGCTTGCAGCTGATGTTCTAGCTGGCAAGATATTGGATGATGAAACATATTATTATGTATCAAAATCATGGCTGCATCAGTGGATTAAAAGGAAA AACCTCGATGCCCCTAGTGAAGCTGATGCAGGACCAACTGGTTCGATTACATGTCCTCATGGCCACCTACTTCCTGACCAAGCTCCTGGTGCCAAACGAT TGCTGGTTCCAAGGAATCTGTGGGACTTCTTCTGTGAAGATGCCTTGCACGTTAAACCTGATGATCCAAGTGGTTGTATCTGTTTCCCCTTTGGTTCGGA TCAGTGTCCTGAATGTGGTGATGAGCTTTCTGAAGTTGCCTGCCTGGAAGATTCACTTAGGGCTGTTAAACATAAACAGAGACAAAATCACGAGAAGTTG GTTAATGGAAAAAATATTCCCCTTTCTTTAGGCAGCAAGTACTATTTGGTGCCTTCTTCATGGTTAATGACATGGAGACATTACATATCTGCAAGTGGCA AGAATATTTCTTCATCTCCACAGCCTGAAGCTCTTAATGTCGTGATTGATTCACTGAGGTGTGAAAAGCATTCTCTACTTCTAGAGAGACCTCCTGTCCT GGTTTCTAAACGTGGCGCACTTGTCCAGAGATGTTCAAATACAGAACAGTTGACGATAATTCCTGAGAGTGATTGGTCCGCCTTTTGTCAAGAGTGGGGT GGTGACATGGATAAAGGCATATCTGCAATAATTGAGCCCAACAATTCTGCAGAACAGAATGTTCCTGGAAGAAGCGACGATATGCTGATATCTGACGAGC ACTTGAATTCTCAAGATGAGGCGAATACTGGGGCTGTGACAAAACCACCTGTTATTAAAACATTTCCCGAGGTTTGTGAGGTCTGCATAGGTGAAAAAGA AAGTTGCGAGTTGATGGAAAAACTGAACTACCTGAATGCGGAGATATATGTGTCTCTTGTACGTGGCAAGCAAGCTCCAAAATCAATTATGGAAGCGTCT GATGCTCCTTTTGAGCCAGATCGGAGGGCATCAAAACGCACTAGAAAGGGCAGCAATGGGAATACTGTAAATTTCAAAGTTTCTGGTTCCATGTCAGTGT ACCAGTTGAAGATGATGATATGGGAGTCTCTAGGGGTTGTTAAGGAGAACCAAATTCTCCATAAAGGCTCCAAGATACTTGATGAAGAGACTGCTACTTT AGCAGACCTCAACATATTTCCCGGCGATCGGCTTTGGGTGCAGGACTCTGAAATCCACGAGCATAGGGATATTGCCGATGAGCTCGTTGACGAGAAAATG GAGGCAATGAATGGGGAGAGGGGGTTTCGGGGAACACTCTTGACGTCTGGTATTTCATCACAAGTAGTTTAG
AA sequence Show only first row Show all	>Lus10042726 pacid=23182067 polypeptide=Lus10042726 locus=Lus10042726.g ID=Lus10042726.BGIv1.0 annot-version=v1.0 MSVFLLAVHLPCLYQQQMIKLFPENPVCANAWSKENSRMSRPTTRSKNKRHRSGENVNITSEILRKIHATGELTTENVNQLYMILKPVCQGCRVNTKDNP NCFCGLIPAQSGSRKSGLWQKTTDILEALGSDPSDDLRADDSPAGLTNLGATCYANSILQFLYMNTAFRDGLFSVEPEVLKQQPVLNEIARLFARLHASK MAFIDSAPFVKTLELDNGVQQDSHEFLTLLLSLLERCLSHSSISKTKSIVQDLFRGSVSHETKCSKCSNVSEASSKMEDFYELELNVKGMKSLKDSLDDY LSVEDLDGDNQYFCSSCNMRVDATRSIKLRTLPAVLNFQLKRCIFLPKTTTKKKITSAFGFPEELDMGQRLCEPSQNDWIYNLSAVLIHKGSAVNSGHYI AHIKDENTGQWWEFDDESVSNLGHHPFGESSSRSTAEILPSKVNGGLELGSNGSHLDAQLPQPSDSDSSSNAKTFSSSDAYMLMYTLRSLRNADDKTCRI RGVSSVELKGQGSSSHDDFLPSHLSEDIQEQNASYVNACQTFKEKKEAEMLHVTERRQEVRSILSEAPVQSLGEPFCWISTDWLHHWADDFTAPPLDNTS ILCLHGKVPVSKVSSMKRLSCEAWAKLLSKYGGGPTLTNEDYCKACLLDGAKTLVSVDSYRDRRKLMKELAADVLAGKILDDETYYYVSKSWLHQWIKRK NLDAPSEADAGPTGSITCPHGHLLPDQAPGAKRLLVPRNLWDFFCEDALHVKPDDPSGCICFPFGSDQCPECGDELSEVACLEDSLRAVKHKQRQNHEKL VNGKNIPLSLGSKYYLVPSSWLMTWRHYISASGKNISSSPQPEALNVVIDSLRCEKHSLLLERPPVLVSKRGALVQRCSNTEQLTIIPESDWSAFCQEWG GDMDKGISAIIEPNNSAEQNVPGRSDDMLISDEHLNSQDEANTGAVTKPPVIKTFPEVCEVCIGEKESCELMEKLNYLNAEIYVSLVRGKQAPKSIMEAS DAPFEPDRRASKRTRKGSNGNTVNFKVSGSMSVYQLKMMIWESLGVVKENQILHKGSKILDEETATLADLNIFPGDRLWVQDSEIHEHRDIADELVDEKM EAMNGERGFRGTLLTSGISSQVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49600		SUP32, ATUBP26,...	ubiquitin-specific protease 26...		Lus10042726 [exp]	0	1
AT5G53620			unknown protein		Lus10008846 [exp]	2.0	0.9296
AT3G62310			RNA helicase family protein (....		Lus10005261 [exp]	2.8	0.9102
AT2G17510		EMB2763	EMBRYO DEFECTIVE 2763, ribonuc...		Lus10029500 [exp]	3.5	0.9260
AT2G43410		FPA	RNA binding (.1.2.3.4)		Lus10019359 [exp]	5.0	0.8658
AT3G53320			unknown protein		Lus10019909 [exp]	9.2	0.8647
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Lus10011687 [exp]	9.3	0.9254
AT3G54750			unknown protein		Lus10016201 [exp]	15.0	0.9003
AT4G21660			proline-rich spliceosome-assoc...		Lus10011207 [exp]	15.9	0.8504
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Lus10022136 [exp]	16.3	0.8916
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Lus10009494 [exp]	17.0	0.8736

Compare expression of checked genes

Lus10042726 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.