Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63420 65 / 2e-14 AGG1, ATAGG1 Ggamma-subunit 1 (.1.2) AT3G22942 59 / 3e-12 AtGG2, AGG2 G-protein gamma subunit 2 (.1) AT5G18970 38 / 0.0008 AWPM-19-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029687 [exp] 170 / 7e-55 AT3G63420 69 / 4e-16 Ggamma-subunit 1 (.1.2) Lus10014714 [exp] 63 / 2e-13 AT3G63420 104 / 2e-30 Ggamma-subunit 1 (.1.2) Lus10003092 [exp] 63 / 2e-13 AT3G63420 103 / 2e-30 Ggamma-subunit 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G081500 [exp] 102 / 7e-29 AT3G63420 62 / 1e-13 Ggamma-subunit 1 (.1.2) Potri.005G179600 [exp] 102 / 1e-28 AT3G63420 81 / 3e-21 Ggamma-subunit 1 (.1.2) Potri.015G142500 [exp] 72 / 6e-17 AT3G22942 100 / 4e-29 G-protein gamma subunit 2 (.1) Potri.002G046900 [exp] 58 / 1e-11 AT3G63420 102 / 1e-29 Ggamma-subunit 1 (.1.2) Potri.005G216100 [exp] 56 / 8e-11 AT3G63420 103 / 4e-30 Ggamma-subunit 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042727 pacid=23181986 polypeptide=Lus10042727 locus=Lus10042727.g ID=Lus10042727.BGIv1.0 annot-version=v1.0 ATGGAGGATGGAAATAGCAGCGTGGTTGGTGATGACCAGCTCTTAGAAACCAGATCTTCATATGAAGAAGATCAAGTTCAACAACAACAACAGCAAGAGG AAGAAGAAGAAGAAGAAGAAGAGTCAACAATTACTACTCGTACAGTGATGTCAAGGAGGAGCACCAATTCAATTTCTTCTTCTCCTCACCCTACAACTCC TACTACTCCAACGACCAACAATGGCTACTTCGGCAAGCATCGGATGGCTGCTTCCCTCTCCATTCTTCAACTTCAAATCCAATCCACCCAGGAAGAACTG GATCAGCTGGAAAGCATGGGCGGCTGCTCTGCTGTCTGCCCAGAATTGGTGACGAGTGTGGAATCCATCCCTGACCCTCTCCTCCCTTCGAGCAGAGGAC CAACAAATGAAAACTGGGATCGCTGGTTTCGAGGAGCCCACCACAACACGCGTCGCAGGTGGATCTGA
AA sequence Show only first row Show all	>Lus10042727 pacid=23181986 polypeptide=Lus10042727 locus=Lus10042727.g ID=Lus10042727.BGIv1.0 annot-version=v1.0 MEDGNSSVVGDDQLLETRSSYEEDQVQQQQQQEEEEEEEEESTITTRTVMSRRSTNSISSSPHPTTPTTPTTNNGYFGKHRMAASLSILQLQIQSTQEEL DQLESMGGCSAVCPELVTSVESIPDPLLPSSRGPTNENWDRWFRGAHHNTRRRWI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Lus10042727 [exp]	0	1
AT3G62420	bZIP	ATBZIP53	basic region/leucine zipper mo...		Lus10025024 [exp]	4.2	0.9215
AT5G04760	MYB		Duplicated homeodomain-like su...		Lus10036413 [exp]	5.5	0.9224
AT3G61540			alpha/beta-Hydrolases superfam...		Lus10001877 [exp]	6.0	0.9155
AT2G16790			P-loop containing nucleoside t...		Lus10037373 [exp]	6.8	0.8804
AT4G21450			PapD-like superfamily protein ...		Lus10002595 [exp]	8.2	0.8969
AT3G62420	bZIP	ATBZIP53	basic region/leucine zipper mo...		Lus10010005 [exp]	10.7	0.9198
AT1G26670		VTI1B, ATVTI12,...	VESICAL TRANSPORT V-SNARE 12, ...		Lus10037141 [exp]	12.0	0.8993
AT1G54320			LEM3 (ligand-effect modulator ...		Lus10001834 [exp]	12.5	0.8904
AT3G26020			Protein phosphatase 2A regulat...		Lus10036926 [exp]	12.6	0.8879
AT5G45920			SGNH hydrolase-type esterase s...		Lus10013941 [exp]	14.1	0.9044

Compare expression of checked genes

Lus10042727 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.