Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05920 628 / 0 DHS, EDA22 embryo sac development arrest 22, deoxyhypusine synthase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029688 [exp] 735 / 0 AT5G05920 657 / 0.0 embryo sac development arrest 22, deoxyhypusine synthase (.1.2) Lus10028867 [exp] 286 / 8e-93 AT5G04850 399 / 7e-139 SNF7 family protein (.1.2) Lus10020239 [exp] 189 / 5e-35 AT5G05920 181 / 2e-55 embryo sac development arrest 22, deoxyhypusine synthase (.1.2) Lus10032793 [exp] 123 / 7e-35 AT5G05920 99 / 3e-26 embryo sac development arrest 22, deoxyhypusine synthase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G186900 [exp] 648 / 0 AT5G05920 651 / 0.0 embryo sac development arrest 22, deoxyhypusine synthase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0085 [flax] [poplar] FAD_DHS PF01916 [flax] [poplar] DS Deoxyhypusine synthase
Representative CDS sequence Show only first row Show all	>Lus10042728 pacid=23181856 polypeptide=Lus10042728 locus=Lus10042728.g ID=Lus10042728.BGIv1.0 annot-version=v1.0 ATGGAGAACCAGCTACCCTCGTCCGTCCATACCACCGTGTTCAAAGAATCGGAGTCACTGGAAGGGAAATCCCATAAGATCCAAGGTTACGACTTCAACC TAGGAGTCGATTACCCTCAGCTTCTCAAATCAATGCTCTCAACTGGCTTCCAAGCTTCCAATCTCGGCGACGCTATTTCAGTCGTTAATCAGATGTTAGA CTGGAGTCTTGCTGATGAGGCCGTTGCTGACGATTGCAACGACGGGGAGAAAGACCCTGCTTACAGAGGGTCTGTGAGGTGCAAAATCTTCTTGGGTTTC ACTTCTAATCTAATTTCGTCCGGTGTTAGAGATACAGTTCGCTACCTCGTCCAGCATCAAATGGTTGATGTGGTGGTAACTACTGCAGGTGGGATAGAGG AAGATCTGATCAAATGTCTGGCCCCAACATACAGGGGAGACTTCTCTCTGCCTGGATCCCAGCTACGAGCAAAGGGGTTGAATCGCATTGGCAACTTGTT AGTTCCTAATGATAACTACTGCAAATTTGAGGACTGGATTATTCCCATTTTCGACCAGATGTTGCAAGAACAAACTGAAAATAATACTCTATGGACACCA TCAAAGCTAATTGCAAGACTGGGGAAAGAGATTGACTGTGAAAGTTCGTATCTTTACTGGGCCTACAAGAATGACATTCCAGTGTTCTGTCCTGGATTAA CTGATGGTTCTCTTGGGGACATGCTGTACTTTCATTCCTTCCGTAATCCAGGCTTGATTGTAGACATAGTTCAAGGCGAAGCCACGAATGGTGAGGCTGT TCATGCCACTCCTAGAAAAACCGGGATTATTATTCTTGGAGGGGGGCTCCCTAAGCATCACATATGCAATGCAAATATGATGCGTAACGGTGCAGATTAT GCGGTTTTCATCAATACAGCGCAAGAATTCGACGGGAGCGATTCTGGAGCTCAGCCTGATGAAGCTGTTTCGTGGGGGAAAATACGAGGCTCCGCTAAAA CTGTGAAGGTACATTGTGATGCAACAATCGCATTCCCCCTGCTGGTTGCTGAGACATTTGCGACGAGGCAAAATAAAGCATCAAGGTGA
AA sequence Show only first row Show all	>Lus10042728 pacid=23181856 polypeptide=Lus10042728 locus=Lus10042728.g ID=Lus10042728.BGIv1.0 annot-version=v1.0 MENQLPSSVHTTVFKESESLEGKSHKIQGYDFNLGVDYPQLLKSMLSTGFQASNLGDAISVVNQMLDWSLADEAVADDCNDGEKDPAYRGSVRCKIFLGF TSNLISSGVRDTVRYLVQHQMVDVVVTTAGGIEEDLIKCLAPTYRGDFSLPGSQLRAKGLNRIGNLLVPNDNYCKFEDWIIPIFDQMLQEQTENNTLWTP SKLIARLGKEIDCESSYLYWAYKNDIPVFCPGLTDGSLGDMLYFHSFRNPGLIVDIVQGEATNGEAVHATPRKTGIIILGGGLPKHHICNANMMRNGADY AVFINTAQEFDGSDSGAQPDEAVSWGKIRGSAKTVKVHCDATIAFPLLVAETFATRQNKASR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Lus10042728 [exp]	0	1
AT1G78520			Carbohydrate-binding X8 domain...		Lus10026175 [exp]	2.0	0.8055
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10021150 [exp]	9.6	0.7956
AT5G12220			las1-like family protein (.1.2...		Lus10026818 [exp]	12.5	0.7872
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10019321 [exp]	13.2	0.8299
AT1G04010		ATPSAT1	phospholipid sterol acyl trans...		Lus10008234 [exp]	20.1	0.7517
AT3G10530			Transducin/WD40 repeat-like su...		Lus10035740 [exp]	22.6	0.7810
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Lus10006910 [exp]	28.1	0.7852
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10043062 [exp]	30.2	0.7677
AT2G39090		APC7, AtAPC7	anaphase-promoting complex 7, ...		Lus10043419 [exp]	33.2	0.7090
AT1G15420			unknown protein		Lus10030351 [exp]	34.1	0.7901

Compare expression of checked genes

Lus10042728 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.