Plant FIBer expression Database

Lus10042729 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G10910 380 / 6e-129 mraW methylase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029688
[exp]
642 / 0 AT5G05920 657 / 0.0 embryo sac development arrest 22, deoxyhypusine synthase (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G179700
[exp]
479 / 1e-167 AT5G10910 413 / 2e-142 mraW methylase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF01795 Methyltransf_5 MraW methylase family
Representative CDS sequence
>Lus10042729 pacid=23181977 polypeptide=Lus10042729 locus=Lus10042729.g ID=Lus10042729.BGIv1.0 annot-version=v1.0
ATGGCGGCCGGACATATGCTGTGCCGGTGGTTTCCCGTTCCGTCGCCGTTTATTGCCGCGACCCGTCTTAATATCGCCACTAAATTGTTGGCAACTACTC
CTCCTCCTATTACGCCGTCCTCTTCCATCCGCCGAATAGATACTAGAGGCTTGGCTACGTCCGCCGCCACTGTTACTACTTCCAGTACCAGCAGCGACGA
CGCCAAGAAAAGGAGGAGAAAGGAGAAGGAAAGGAAGAAAGCGGCGGCGGAAGCAGCTGCGAAGAACAAAAAGGAGAAGAGAAGGACTCGTTCCGATAAA
GAGCACGTTTCTTCACTCGATTTCTACAGCAATTACCAAGACCATGTCCCGGTCATGCTTCGTGAAGTTATCGACGTCTTCTCCTCTTTGCCTCTTCGAT
CCTTCGTCGATTGTACACTTGGCGCCGCCGGCCATTCCTCCGCCATAATTAAAGCGCATCCTGGATTGGAGCATTACATAGGAATGGATGTTGATCCTGA
AGCTCACGCCAAAGCTCGATCTCACATTGATTCTCTATTGCTTTCTGATTCTCATTCTAAACTGAAAGCACACACGTTGATTACGAACTTCAAACGTATT
AAATCAGCCATCGGGGAGGCTGATGGAAACCTAATAGAGTCCGGAGTCGATGCAATCTTGATGGACCTTGGAATGTCGTCAATGCAGGTGAACAATCCTG
AAAGAGGGTTCAGTGTTATGGCTGATGGACCTCTTGATATGCGGATGGATCCTCGGGCAAGTCTGAAAGCAGAAGACATTCTAAATTACTGGCCTGATGC
AGAAGTTGGCCGGGTTCTGCGTGACTATGGAGAAGAAAGCAACTGGCGAACTCTTCAGAATAAGATTGTTCTAGCTCGTGTAAGTGGTGGCATACATTCC
ACTGCTGAACTGATTGATCTCATTCGTGGTGTGACTCGTGGGACAAGGGGCGGAAGGCCAGGTTGGATAAAGACAGCTACGCGTGTGTTCCAAGCTCTGA
GAATTGCTGTTAATGATGAGCTTAATACACTGGAAAAGTCCCTTAAGGACTGCTTTGGGTGCCTTTCCCCTGGGGGAAGACTTGCTGTCATATCTTTTCA
TAGTTTGGAGGACAGGATTGTGAAACAAACGTTTCTCAGCATCATAGAAACTGCTGGTGGGAGTGATTGGGGGGATACTGACAGAGACGATGATGGTACC
AGAAGGGATTTTAGAAAGACAAGTGATGATTGTGAAGCAAGAGAAACATGGATTAGACAAATAGTACGAGGCCAAAACGGATCGATTCTTACGAAGAGGC
CTATAACACCTTCAGAAGAAGAAGAAAGATTGAATCGACGATGCAGGAGTGCCAAACTTCGGGTGATTGAGAAAGCCCGGTGA
AA sequence
>Lus10042729 pacid=23181977 polypeptide=Lus10042729 locus=Lus10042729.g ID=Lus10042729.BGIv1.0 annot-version=v1.0
MAAGHMLCRWFPVPSPFIAATRLNIATKLLATTPPPITPSSSIRRIDTRGLATSAATVTTSSTSSDDAKKRRRKEKERKKAAAEAAAKNKKEKRRTRSDK
EHVSSLDFYSNYQDHVPVMLREVIDVFSSLPLRSFVDCTLGAAGHSSAIIKAHPGLEHYIGMDVDPEAHAKARSHIDSLLLSDSHSKLKAHTLITNFKRI
KSAIGEADGNLIESGVDAILMDLGMSSMQVNNPERGFSVMADGPLDMRMDPRASLKAEDILNYWPDAEVGRVLRDYGEESNWRTLQNKIVLARVSGGIHS
TAELIDLIRGVTRGTRGGRPGWIKTATRVFQALRIAVNDELNTLEKSLKDCFGCLSPGGRLAVISFHSLEDRIVKQTFLSIIETAGGSDWGDTDRDDDGT
RRDFRKTSDDCEARETWIRQIVRGQNGSILTKRPITPSEEEERLNRRCRSAKLRVIEKAR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G10910 mraW methylase family protein ... Lus10042729
[exp]
0 1
AT4G12060 Double Clp-N motif protein (.1... Lus10007005
[exp]
1.0 0.8819
AT4G04790 Tetratricopeptide repeat (TPR)... Lus10043070
[exp]
10.7 0.8797
AT1G31860 HISN2, AT-IE HISTIDINE BIOSYNTHESIS 2, hist... Lus10034105
[exp]
14.4 0.8293
AT5G42390 SPP stromal processing peptidase, ... Lus10021971
[exp]
15.0 0.8088
AT3G18080 BGLU44 B-S glucosidase 44 (.1) Lus10009644
[exp]
16.1 0.8096
AT3G03420 Ku70-binding family protein (.... Lus10014579
[exp]
21.4 0.8750
AT3G63510 FMN-linked oxidoreductases sup... Lus10016407
[exp]
23.0 0.8539
AT5G50320 EAST1, AtELP3, ... HISTONE ACETYLTRANSFERASE OF T... Lus10001102
[exp]
33.7 0.8462
AT4G26190 Haloacid dehalogenase-like hyd... Lus10034676
[exp]
34.2 0.8600
AT1G09810 ECT11 evolutionarily conserved C-ter... Lus10037365
[exp]
37.1 0.8464

Lus10042729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.