Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15170 514 / 2e-180 MATE efflux family protein (.1) AT1G71140 506 / 2e-177 MATE efflux family protein (.1) AT1G15150 503 / 5e-176 MATE efflux family protein (.1) AT1G15160 491 / 1e-171 MATE efflux family protein (.1) AT1G15180 490 / 5e-171 MATE efflux family protein (.1.2) AT2G04070 442 / 3e-152 MATE efflux family protein (.1) AT2G04100 437 / 3e-150 MATE efflux family protein (.1) AT2G04080 436 / 5e-150 MATE efflux family protein (.1) AT2G04050 436 / 1e-149 MATE efflux family protein (.1) AT2G04040 433 / 9e-149 ATDTX1 detoxification 1, MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029694 [exp] 884 / 0 AT1G15170 563 / 0.0 MATE efflux family protein (.1) Lus10018136 [exp] 734 / 0 AT1G71140 571 / 0.0 MATE efflux family protein (.1) Lus10018135 [exp] 683 / 0 AT1G15170 524 / 0.0 MATE efflux family protein (.1) Lus10018134 [exp] 642 / 0 AT1G15170 542 / 0.0 MATE efflux family protein (.1) Lus10028540 [exp] 636 / 0 AT1G15170 537 / 0.0 MATE efflux family protein (.1) Lus10004899 [exp] 538 / 0 AT1G15170 474 / 2e-166 MATE efflux family protein (.1) Lus10000619 [exp] 485 / 2e-168 AT1G71140 528 / 0.0 MATE efflux family protein (.1) Lus10009132 [exp] 484 / 2e-168 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1) Lus10009140 [exp] 474 / 1e-164 AT1G64820 560 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G116900 [exp] 628 / 0 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.008G126500 [exp] 600 / 0 AT1G15170 546 / 0.0 MATE efflux family protein (.1) Potri.010G117000 [exp] 582 / 0 AT1G15170 545 / 0.0 MATE efflux family protein (.1) Potri.004G094900 [exp] 499 / 8e-175 AT1G71140 503 / 3e-176 MATE efflux family protein (.1) Potri.004G093400 [exp] 488 / 2e-170 AT1G71140 482 / 8e-168 MATE efflux family protein (.1) Potri.004G094800 [exp] 481 / 6e-168 AT2G04100 479 / 2e-167 MATE efflux family protein (.1) Potri.017G120600 [exp] 478 / 2e-166 AT1G66760 468 / 2e-162 MATE efflux family protein (.1.2) Potri.017G120400 [exp] 476 / 2e-165 AT2G04100 508 / 3e-178 MATE efflux family protein (.1) Potri.004G094700 [exp] 467 / 6e-162 AT2G04100 425 / 3e-145 MATE efflux family protein (.1) Potri.017G120500 [exp] 464 / 5e-161 AT2G04100 468 / 3e-162 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10042732 pacid=23182047 polypeptide=Lus10042732 locus=Lus10042732.g ID=Lus10042732.BGIv1.0 annot-version=v1.0 ATGGACCAGAGACTGCTTTCTCCGCCCCCGCAATCACGATCCCACGGCGCCGGCGTCGAGTTGACGTGGAGGGTATTCATCGACGAGGTCAAGCGACTTG GCTACATAGCCGGACCTATGGTCGCCATCAATCTGTCTCAGTACCTCCTCCAAGTCATATCGTTGATGATGGTCGGACATTTAGGAGAGCTTCAACTCTC CAGCACCGCCATTGCCGTTTCTCTCGCAAGCGTCACTGGTTTCAGCGTCATCTTAGGGATGTCGAGCGCACTGGAAACTCTGTGTGGGCAAGCATTTGGA GCTGGTCAATATCGGATACTTGGAACCCTAACTTACACCGCTATCTTCTGCTTACTGCTGGTGTGTATTCCCCTGTCAATCCTCTGGATCTACATGGAGA AGATACTCGTTTTAGTCGGCCAAGATCCTACCATCTCCCACGAAGCAGGAATTTTCCAGATGTGGCTCATTCCTTGTCTCTTCGCTTACGCAATGGCTCA GCCGCTCGTTCGATATCTCCAAGCACAGAGTCTGATCGTACCGATGCTCGTAACTGCTGTTATTACGCTTTGCTTTCACGTCCCGGTCTGCTGGGCTCTA GTGTTCAGGACCAGACTGCAGAACGTGGGAGCAGCATTGGCAATGTGCTTGTCGAATTGGTTGAGCTTCGCTACTCTGGCACTGTATGTGAAGTACTCCC CTTCCTGTGCCAGAACTATGGTCCCCATTTCCACCGACTTGTTCCGTGGCATTGGCGAGTTCTTCCGCTATGCCATCCCTTCAGCAGTCATGATCTGCCT GGAATGGTGGTCATTTGAGCTTCTCGTTCTGCTTTCGGGTCTGTTGCCAAATCCTGCTCTTGAAACATCTGTCCTGTCAGTCTGCCTAACAACCATCGCA ACTTTTTACTCGATACCATATGGACTGGGTGCTGCAGCCAGCACTAGAGTCTCGAACGAACTAGGCAGGGGTAAACCAGAGATGGCACGCATATCGGTGC TTTCAGTGATGTCGATTGGAGTAGCTGAGGCTCTCCTGGTAAGCATATCACTATATGCAGCACGGCATGCATTTGGTTACAGCTTCAGCAATGAAAAGGA AGTTATAGAGTATGTGACAAGGATGGCTCCTCTGATTTGCTTGTCAGTTATAATGGACAGTTTGCAAGGGGTTCTCTCAGGAATTGCAAGGGGATGTGGA TGGCAGCATATAGGAGCCTATATCAACCTTGGAGCCTTCTATTTATGTGGTATTCCAGTTGGAGTTGCATTGGGTTTCTGGACAGACTTAAGAGGAAAGG GTCTTTGGATTGGTGTCCAAGTTGGTGCATTTACACAGACGTTGCTTCTGTTCCTTGTTACACTATGCACTAACTGGGAAAAACAGGCGAGTGATGCTAG GCAGAGGATATTAAAAGGAGAATCAAGCGTTACGAATGTGTTGATTTGA
AA sequence Show only first row Show all	>Lus10042732 pacid=23182047 polypeptide=Lus10042732 locus=Lus10042732.g ID=Lus10042732.BGIv1.0 annot-version=v1.0 MDQRLLSPPPQSRSHGAGVELTWRVFIDEVKRLGYIAGPMVAINLSQYLLQVISLMMVGHLGELQLSSTAIAVSLASVTGFSVILGMSSALETLCGQAFG AGQYRILGTLTYTAIFCLLLVCIPLSILWIYMEKILVLVGQDPTISHEAGIFQMWLIPCLFAYAMAQPLVRYLQAQSLIVPMLVTAVITLCFHVPVCWAL VFRTRLQNVGAALAMCLSNWLSFATLALYVKYSPSCARTMVPISTDLFRGIGEFFRYAIPSAVMICLEWWSFELLVLLSGLLPNPALETSVLSVCLTTIA TFYSIPYGLGAAASTRVSNELGRGKPEMARISVLSVMSIGVAEALLVSISLYAARHAFGYSFSNEKEVIEYVTRMAPLICLSVIMDSLQGVLSGIARGCG WQHIGAYINLGAFYLCGIPVGVALGFWTDLRGKGLWIGVQVGAFTQTLLLFLVTLCTNWEKQASDARQRILKGESSVTNVLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15170			MATE efflux family protein (.1...		Lus10042732 [exp]	0	1
AT1G25240			ENTH/VHS/GAT family protein (....		Lus10019132 [exp]	1.0	0.8060
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10033616 [exp]	2.8	0.7917
					Lus10007835 [exp]	3.5	0.6462
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10012493 [exp]	4.9	0.6578
AT1G05675			UDP-Glycosyltransferase superf...		Lus10010469 [exp]	11.5	0.6088
					Lus10016118 [exp]	12.4	0.6088
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10004323 [exp]	16.2	0.5784
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005660 [exp]	19.6	0.5594
AT5G39300		ATHEXPALPHA1.18...	EXPANSIN 25, expansin A25 (.1)		Lus10000305 [exp]	22.0	0.5370
AT5G17200			Pectin lyase-like superfamily ...		Lus10014826 [exp]	26.2	0.6002

Compare expression of checked genes

Lus10042732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.