Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77405 586 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22670 133 / 1e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G46100 130 / 4e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 124 / 2e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12700 123 / 7e-30 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT5G39710 122 / 2e-29 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09900 121 / 2e-29 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G53700 121 / 3e-29 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 120 / 4e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 119 / 1e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029697 [exp] 831 / 0 AT1G77405 613 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004533 [exp] 134 / 7e-34 AT2G06000 517 / 4e-180 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10004615 [exp] 130 / 1e-32 AT2G06000 531 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10009201 [exp] 119 / 5e-30 AT1G12700 274 / 3e-86 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10011566 [exp] 123 / 8e-30 AT5G65820 826 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027267 [exp] 123 / 1e-29 AT1G74580 813 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017658 [exp] 122 / 1e-29 AT1G02060 792 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016727 [exp] 120 / 3e-29 AT5G61990 345 / 2e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 120 / 8e-29 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G080300 [exp] 635 / 0 AT1G77405 616 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G098400 [exp] 129 / 8e-32 AT2G02150 924 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 127 / 4e-31 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271200 [exp] 125 / 9e-31 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G181900 [exp] 122 / 5e-30 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G123600 [exp] 124 / 6e-30 AT1G06710 1248 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 123 / 6e-30 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G242200 [exp] 122 / 9e-30 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G141800 [exp] 122 / 9e-30 AT2G06000 588 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Potri.006G271400 [exp] 122 / 1e-29 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10042736 pacid=23182056 polypeptide=Lus10042736 locus=Lus10042736.g ID=Lus10042736.BGIv1.0 annot-version=v1.0 ATGACGATACCCCAACCTCCTCCGACCCGCAGTCGCACTTCCACTGTAATGAATCAGATTTTCTCTGTCATGCTCCAAGCTCGCCCATTCGACGCCAATC TCACCTCATCCACCACCTCCGCCGCTCTCGTCACCGCTGATTTGGTTTCCGATGTCCTCCGCTCAATACCAAGATTCTTCTTCCTTTCCCCCCGCTCCAT CGGCCGCCAGAACACAACCCGCCACCGCTCTCCGATCAAACAGCGTAATCTCGAGGTGGAACATTGCAAGCGTCGGGACGGATCCCTCGTTCTCGGCCCC GGGGCTTACAGGGATCCGAGGAGAGTGAGTTTGGGCGTCAACAAGGCGTTGGATTTCTTCACATGGCTGGAGACGGATTTAGGGTTCCAGCACACCGAAT CCACATGCCGAGACATGGCCGTTGTGTTGGTCAGAGGGAATAAATTGAATCTGCTATGGGAATTTCTTAGAGAAATGTCAGGTAAAGGAAACGGTGGTGG TTTAAGTCTTGTTACAACAATGACCGTAACCTGTTTGATGAAAGTCCTAGGAGAAGAAGGGTTGGTGAAACAATCATTGGCGTTATTTTATCGGATGAAG AAGTATCACTGCAAGCCCGACGTTTATGCTTATAACACGATCATTTACGCTCTATGCAGAGTTGGGGATTTTAAAAAGGCTAGAGATTTGTTACAGCAGA TGGAGCTTCCTGGGTTCAGATGTCCACCGGATACGTTTACTTACACTATATTGATTAGTTCTTACTGCAAGTATAGTTTGCAAACCGGGTGTAGAAAGGC GATAAGGAGGAGGTTATGGGAAGCCAACCACTTGTTTAGGCTGATGCTTTTCAACGGGTTCGAACCCGATCTCGTTACTTACAATTGTTTGATTGATGGA TGCTGCAAGACGAACAGAATCGAGAGGGCCACGGAGCTTTTTCAAGATATGAGTAAGAGAGGATGTGTCCCGAACCGGGTTACTTATGATTCTTTCATTA GATACTACAGCGTGGTAAATGAGGTTGAGAAAGCCGTCGAGATGTTGAGGATGATGCAGAAGATGAATCATGGGGTGCCGAGTTCGAGTTCGTATACGCC GATTATACATGCGCTTTGTGAAAGTGGGAGGGCTTTGGAAGCTTGGGAGTTTCTTGTTGATCTGGTTAATGGGGGATCAATACCTAGGGAGTATACTTAT AAGCTGGTTTGTGATGCATTAAGGTCGGCGGGAGTAGACGGATTGCCGAATGATGAGTTGCATGATAAGATTAAAGAAGGTATAGATAACAGATTTAGGG ATGTGAAGAAGGTGAAACCAGTTATGGCTCGCAAGTTGGTGTCGCAGCAGGTGCAAACAATCTGTCGTTTTGGTGCCTCGGAGAACTAG
AA sequence Show only first row Show all	>Lus10042736 pacid=23182056 polypeptide=Lus10042736 locus=Lus10042736.g ID=Lus10042736.BGIv1.0 annot-version=v1.0 MTIPQPPPTRSRTSTVMNQIFSVMLQARPFDANLTSSTTSAALVTADLVSDVLRSIPRFFFLSPRSIGRQNTTRHRSPIKQRNLEVEHCKRRDGSLVLGP GAYRDPRRVSLGVNKALDFFTWLETDLGFQHTESTCRDMAVVLVRGNKLNLLWEFLREMSGKGNGGGLSLVTTMTVTCLMKVLGEEGLVKQSLALFYRMK KYHCKPDVYAYNTIIYALCRVGDFKKARDLLQQMELPGFRCPPDTFTYTILISSYCKYSLQTGCRKAIRRRLWEANHLFRLMLFNGFEPDLVTYNCLIDG CCKTNRIERATELFQDMSKRGCVPNRVTYDSFIRYYSVVNEVEKAVEMLRMMQKMNHGVPSSSSYTPIIHALCESGRALEAWEFLVDLVNGGSIPREYTY KLVCDALRSAGVDGLPNDELHDKIKEGIDNRFRDVKKVKPVMARKLVSQQVQTICRFGASEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77405			Pentatricopeptide repeat (PPR)...		Lus10042736 [exp]	0	1
AT3G13110		SAT-M, SAT-A, S...	SERINE ACETYLTRANSFERASE 3, SE...		Lus10040503 [exp]	1.4	0.8833
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10018393 [exp]	2.0	0.8868
AT3G51790		ATG1	transmembrane protein G1P-rela...		Lus10031835 [exp]	4.2	0.8556
AT2G22900			Galactosyl transferase GMA12/M...		Lus10011550 [exp]	4.6	0.8689
AT2G35390			Phosphoribosyltransferase fami...		Lus10030948 [exp]	7.2	0.8141
AT1G27970		NTF2B	nuclear transport factor 2B (....		Lus10032033 [exp]	7.4	0.8646
AT3G51790		ATG1	transmembrane protein G1P-rela...		Lus10031267 [exp]	7.6	0.8089
AT1G70600			Ribosomal protein L18e/L15 sup...		Lus10036855 [exp]	8.0	0.8652
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10015718 [exp]	9.2	0.8252
AT3G58610			ketol-acid reductoisomerase (....		Lus10011918 [exp]	9.4	0.8483

Compare expression of checked genes

Lus10042736 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.