Plant FIBer expression Database

Lus10042737 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G21695 51 / 7e-08 hydroxyproline-rich glycoprotein family protein (.1)
AT1G77400 49 / 4e-07 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029698
[exp]
151 / 6e-46 AT1G77400 100 / 3e-26 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G181200
[exp]
66 / 3e-13 AT1G21695 50 / 2e-07 hydroxyproline-rich glycoprotein family protein (.1)
Potri.002G080200
[exp]
54 / 1e-08 AT1G21695 50 / 1e-07 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence
>Lus10042737 pacid=23181923 polypeptide=Lus10042737 locus=Lus10042737.g ID=Lus10042737.BGIv1.0 annot-version=v1.0
ATGACGGTGGAGATAGACGATTCATTCAAGAAACCAGGAGCAGTTCCGTTCAAATGGGAGATCCGGCCCGGCGTCCCCAAGCTCCAACACCAACACAGTT
CCCCTTTACAACCCAAAAAACACCTCTCCCCGCCCCCACTTCTTTCCCCATCTCCGCCGTCTTTGATAACCACCTCTCGCTCCCGCTCCCGCCATTCTTC
TCCAATCTCCTCCTCCGTCTTCCTCCATCCTGACCTCCAAACTCGTGGCTCATCCTTCCGATCGGATCCGCGTTCTCACTCGGAACGCTGGAGGACGGAG
CGGAGGCAACAACCGGAGGTGGTGGCTCCTGCCGGCTGCTTCGTCAATCTGCCTTCTCTGCCTAAGCTGTTGCTGTTGAGGAAGAAAAGTACCAAGAAGA
AGAGGAATACTACTGCTTCCTCTGCCACTGTGGCGGCCGTCCCTGAAGAGGATTATGGCTCGGATGGCTCCGAGACGTTGTCGAGGTGGTCTGTTTCGAG
CAGGAGGTCGCTGCAGTCTCCTATGTATATGGACTCGCCGGCGTCGCCTTACTCGTATTCTTCTTCGTCTTATGATCAGCAGCCATCTCCGCGTCCTCCT
CCTCCGCCTATGGGAGATGCTCAGTGGGCTGGCTTTGCACTTTTTTAA
AA sequence
>Lus10042737 pacid=23181923 polypeptide=Lus10042737 locus=Lus10042737.g ID=Lus10042737.BGIv1.0 annot-version=v1.0
MTVEIDDSFKKPGAVPFKWEIRPGVPKLQHQHSSPLQPKKHLSPPPLLSPSPPSLITTSRSRSRHSSPISSSVFLHPDLQTRGSSFRSDPRSHSERWRTE
RRQQPEVVAPAGCFVNLPSLPKLLLLRKKSTKKKRNTTASSATVAAVPEEDYGSDGSETLSRWSVSSRRSLQSPMYMDSPASPYSYSSSSYDQQPSPRPP
PPPMGDAQWAGFALF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G77400 unknown protein Lus10042737
[exp]
0 1
AT2G41810 Protein of unknown function, D... Lus10035451
[exp]
5.6 0.7204
AT1G24140 Matrixin family protein (.1) Lus10035221
[exp]
14.6 0.6888
AT3G54040 PAR1 protein (.1) Lus10017196
[exp]
18.1 0.6688
AT1G08450 AtCRT3, PSL1, E... PRIORITY IN SWEET LIFE 1, EMS-... Lus10020222
[exp]
21.5 0.6360
AT5G52390 PAR1 protein (.1) Lus10012788
[exp]
25.2 0.6490
AT1G10340 Ankyrin repeat family protein ... Lus10038608
[exp]
27.1 0.6688
AT3G51550 FER FERONIA, Malectin/receptor-lik... Lus10029946
[exp]
31.1 0.6670
AT5G20230 SAG14, ATBCB SENESCENCE ASSOCIATED GENE 14,... Lus10025752
[exp]
33.7 0.6362
AT5G45890 SAG12 senescence-associated gene 12 ... Lus10015286
[exp]
38.4 0.6579
AT5G20230 SAG14, ATBCB SENESCENCE ASSOCIATED GENE 14,... Lus10035911
[exp]
41.8 0.6328

Lus10042737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.