Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12855 72 / 2e-13 F-box family protein (.1) AT3G62380 62 / 2e-10 unknown protein AT1G12870 62 / 2e-10 F-box and associated interaction domains-containing protein (.1) AT2G30380 57 / 9e-09 Plant protein of unknown function (DUF641) (.1) AT4G17780 55 / 5e-08 MYB MYB39, AtMYB39 F-box and associated interaction domains-containing protein (.1) AT2G34280 52 / 3e-07 F-box and associated interaction domains-containing protein (.1) AT4G22390 52 / 4e-07 F-box associated ubiquitination effector family protein (.1) AT3G06240 51 / 7e-07 F-box family protein (.1) AT3G08750 50 / 1e-06 F-box and associated interaction domains-containing protein (.1) AT4G10190 47 / 1e-05 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029699 [exp] 790 / 0 AT1G12855 71 / 5e-13 F-box family protein (.1) Lus10029527 [exp] 48 / 1e-05 AT3G07870 70 / 6e-13 F-box and associated interaction domains-containing protein (.1) Lus10038603 [exp] 47 / 2e-05 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10006687 [exp] 44 / 0.0002 AT4G12560 81 / 5e-17 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G104100 [exp] 417 / 4e-144 AT4G12560 67 / 1e-11 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.007G074084 [exp] 77 / 5e-15 AT1G11270 83 / 1e-17 F-box and associated interaction domains-containing protein (.1.2.3) Potri.010G207500 [exp] 68 / 3e-12 AT4G12560 94 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.004G000900 [exp] 66 / 1e-11 AT4G12560 87 / 2e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G129200 [exp] 56 / 2e-08 AT3G07870 110 / 8e-27 F-box and associated interaction domains-containing protein (.1) Potri.011G037312 [exp] 56 / 3e-08 AT3G07870 134 / 3e-35 F-box and associated interaction domains-containing protein (.1) Potri.011G037200 [exp] 53 / 2e-07 AT3G07870 134 / 6e-35 F-box and associated interaction domains-containing protein (.1) Potri.002G223000 [exp] 53 / 3e-07 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.001G224200 [exp] 51 / 7e-07 AT3G07870 105 / 4e-25 F-box and associated interaction domains-containing protein (.1) Potri.001G396800 [exp] 48 / 7e-06 AT3G07870 99 / 2e-22 F-box and associated interaction domains-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042738 pacid=23181866 polypeptide=Lus10042738 locus=Lus10042738.g ID=Lus10042738.BGIv1.0 annot-version=v1.0 ATGAAGAAAGGAGTGGGAAAGGGGTCCAAATTACTGGAGTCTGTAAAAGAGCGATCTATGTCGTCAAAGAAGATGGAGGATGATGACGGAGACAAGAATC GGCCGGTCTCATATCTCGACGAAGCTTGCATCTCAAGTATTCTCATGATGCTACCACTTGAATTCTTACCTTCTTTACGGTTTGTTTGCAAGGCGTGGTA TGGTATCATCAACAGCCTTACTTTCATCGACAAGCGTTTTCTTCAGTCTGAATCTGTTTTGATTTATCTGAAACCGATTTATCCTGTGGTGGGGAGCTCC TCATATGCTCCCTCAACCAAGCAAGAAACCAACAATTGTTTTTCAGTTGAAGGAAAATTGCTTGAATCTCAACCTATCAACTTGTTTGCACTACAATCTG CCAAGAGGTTGACACAGTTCAGCATGAACTTTGTCAAGTTTATCGAGGGGGAAGGTGTGATGACTGGAGATTATGGCATCAGCTGCCTGGGGAATATTAG AGCAGCATGTAACGGTTTCATTTTGCTAGACAACATTCTGAAGAATGGAGGGCTCTTGGTCATGAACCCTGTGACGAGGAAACTACTAGCTCTTCCCGTG GGAACATTGTCTGGACCTCGCGAAGAATCTTATGGATTCGCATCGATGATGAATGGTGGTGGCTATAAACTGGTGCACTTGTTCATGGACAACATGAAAT ATGTTGGTTGTGAGATACTGAACCTTGGCTCTAGATCCTGGAAACCAGTGAATGGACCTCCTTCTTGGCTGTTTCCGGGGTTTTGCCATCATCCTGTTTC GGCCATCGGAGCTCTGCACTGGCTTCCACAAATTGACGAAAACAATTCCATAGTGTCATTGGAACTGGATACAGAAGTGTTCCATGTCATACCACTTCCC AAGGTCGCCGGGGCTCATGACAGAATCCTTGTAATGGGTGACCTGCTATGTTTCGTTACGCACGAGGATCTGGACATTGATATATGGAAAATGAAGAGTT TACATGGAGAATGGACAAAGCATCATAAGATCACAAGAGGGAGCTTGATTGACATGGTGGCTCTGTTTTGTTTGAGAATCAAAGGAGATGTCGTCTTTAA AAGGCACGAAGACGATTCTGTTTACTCGTACGACTTTGAATCGCAGACGATGACTATGGTTCAGATGGATAAAAAGTTCCATTATACTGGTTGGTTGCTG CCTCATGTGAACAGCCTTGGTTCTTGGACAACAACAGCAGCTTAG
AA sequence Show only first row Show all	>Lus10042738 pacid=23181866 polypeptide=Lus10042738 locus=Lus10042738.g ID=Lus10042738.BGIv1.0 annot-version=v1.0 MKKGVGKGSKLLESVKERSMSSKKMEDDDGDKNRPVSYLDEACISSILMMLPLEFLPSLRFVCKAWYGIINSLTFIDKRFLQSESVLIYLKPIYPVVGSS SYAPSTKQETNNCFSVEGKLLESQPINLFALQSAKRLTQFSMNFVKFIEGEGVMTGDYGISCLGNIRAACNGFILLDNILKNGGLLVMNPVTRKLLALPV GTLSGPREESYGFASMMNGGGYKLVHLFMDNMKYVGCEILNLGSRSWKPVNGPPSWLFPGFCHHPVSAIGALHWLPQIDENNSIVSLELDTEVFHVIPLP KVAGAHDRILVMGDLLCFVTHEDLDIDIWKMKSLHGEWTKHHKITRGSLIDMVALFCLRIKGDVVFKRHEDDSVYSYDFESQTMTMVQMDKKFHYTGWLL PHVNSLGSWTTTAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12855			F-box family protein (.1)		Lus10042738 [exp]	0	1
AT3G07870			F-box and associated interacti...		Lus10006403 [exp]	1.0	0.9276
AT3G43660			Vacuolar iron transporter (VIT...		Lus10035086 [exp]	2.0	0.8817
AT5G43280		ATDCI1	"delta\(3,5\),delta\(2,4\)-die...		Lus10002583 [exp]	3.2	0.8785
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10020519 [exp]	5.7	0.8686
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Lus10030312 [exp]	5.9	0.8736
AT1G12855			F-box family protein (.1)		Lus10029699 [exp]	6.6	0.8505
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10037735 [exp]	6.7	0.8821
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Lus10009448 [exp]	7.2	0.8467
AT5G11680			unknown protein		Lus10027000 [exp]	9.3	0.8823
AT1G53590		NTMCTYPE6.1 ,NT...	Calcium-dependent lipid-bindin...		Lus10005578 [exp]	10.4	0.7834

Compare expression of checked genes

Lus10042738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.