Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44110 507 / 4e-177 CYCA1;1 Cyclin A1;1 (.1) AT1G77390 393 / 9e-133 TAM, DYP, CYCA1;2 TARDY ASYNCHRONOUS MEIOSIS, CYCLIN A1;2 (.1) AT5G25380 318 / 1e-103 CYCA2;1 cyclin a2;1 (.1) AT1G80370 318 / 2e-103 CYCA2;4 Cyclin A2;4 (.1) AT1G15570 316 / 2e-102 CYCA2;3 CYCLIN A2;3 (.1) AT5G43080 310 / 2e-101 CYCA3;1 Cyclin A3;1 (.1) AT5G11300 310 / 2e-100 CYC2BAT, CYCA2;2, CYC3B CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) AT1G47210 300 / 2e-97 CYCA3;2 cyclin-dependent protein kinase 3;2 (.1.2) AT1G47230 291 / 3e-94 CYCA3;4 CYCLIN A3;4 (.1.2) AT1G47220 274 / 5e-88 CYCA3;3 Cyclin A3;3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029700 [exp] 804 / 0 AT1G44110 544 / 0.0 Cyclin A1;1 (.1) Lus10028544 [exp] 489 / 1e-170 AT1G44110 476 / 4e-167 Cyclin A1;1 (.1) Lus10014199 [exp] 457 / 9e-159 AT1G44110 451 / 2e-157 Cyclin A1;1 (.1) Lus10008103 [exp] 320 / 1e-103 AT5G11300 465 / 6e-162 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Lus10024822 [exp] 295 / 1e-94 AT1G47230 452 / 5e-159 CYCLIN A3;4 (.1.2) Lus10018715 [exp] 291 / 3e-93 AT1G47230 449 / 6e-158 CYCLIN A3;4 (.1.2) Lus10013886 [exp] 259 / 1e-81 AT5G43080 283 / 2e-93 Cyclin A3;1 (.1) Lus10026598 [exp] 228 / 2e-71 AT5G43080 243 / 9e-80 Cyclin A3;1 (.1) Lus10026803 [exp] 196 / 7e-57 AT2G26760 401 / 2e-138 Cyclin B1;4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G080000 [exp] 607 / 0 AT1G44110 593 / 0.0 Cyclin A1;1 (.1) Potri.005G181400 [exp] 593 / 0 AT1G44110 589 / 0.0 Cyclin A1;1 (.1) Potri.018G034100 [exp] 328 / 9e-107 AT5G11300 498 / 1e-174 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Potri.006G247200 [exp] 325 / 1e-105 AT5G11300 494 / 3e-173 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Potri.014G021100 [exp] 316 / 9e-104 AT1G47230 484 / 2e-172 CYCLIN A3;4 (.1.2) Potri.001G177100 [exp] 313 / 8e-101 AT1G80370 483 / 2e-168 Cyclin A2;4 (.1) Potri.002G121500 [exp] 308 / 8e-101 AT1G47230 472 / 1e-167 CYCLIN A3;4 (.1.2) Potri.003G058200 [exp] 306 / 4e-98 AT1G80370 494 / 9e-173 Cyclin A2;4 (.1) Potri.009G093100 [exp] 265 / 2e-83 AT5G43080 288 / 9e-95 Cyclin A3;1 (.1) Potri.002G010000 [exp] 192 / 2e-55 AT1G76310 550 / 0.0 CYCLIN B2;4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10042739 pacid=23181780 polypeptide=Lus10042739 locus=Lus10042739.g ID=Lus10042739.BGIv1.0 annot-version=v1.0 ATGTCGACGACGACCCAGACTCGCCGCTCTTCCTTTTCTTCCTCCACCACCTCGTCTCTCGCCAAGAAGCGTCATGCTTCCGCTTCCTCCTCACTCAAGT CGACAGCGCTGGCGGCGGGTGGTTCTCCCCCCCCCCCCCCCCCCCCCCCCCCACCCTCCCCCCAAACAACAGAAGAGCGCCTCTCGGAGATATTACTAAC AGCCATAGAAATGCCGCTCAGAAAGGGTCCAAACCCGCCCTCCCTTCCTGCACTCTGTTTCTTGTTCGGTACGGGCTCGACTAAAATCGCCAAGTTGAAG AAAGGACCGACTTCTACTGCTTCAGAAATCAATAAAGTTGGCTTTTCTGCAAATGTTGTACCTGCAGTCGTCATATCCAGTGAGGCTGCTGCTTGCAAGG CCACAAGGGAAGTTGTCCCAACCACTGTTACTGCTGTTCTTGCATCGCGTGATTTCAATGTGTCCCCAAGCAAATCGGACCAAGGTTCAATGTCCATGGA TGAAACCATGTCGACCTGTGATTCCTTCAAGAGCCCTGATGTTGAGTACATCGACAACAATGACTTGCTGCCTGGGATTGATTCCATCAACAAGAAGACT TTGAACAATCTCTTCATTTCAGATCATCATGATGAAAATACAGTAGATGGAATCATTAACATGGATACTGATGACAAGATTGTTGATCTTGATACCGAGT TCGATGACCCTCAACTTTGTGCAACCATTGCCTGCGACATTTACAACCACTTGCGAGCATCTGAGACAAAGAAACGACCTGCAACAGATTTCATGGAGAA AGTTCAGAAAGATGTCAATGCCAGTATGCGTGCTATACTCGTAGATTGGCTTGTAGAGGTTGCAGAAGAGTACAGACTTGTGCCTGATACATTGTATCTG ACAGTGAACTACATTGATCGATATCTCTCTGGGAATGTGATTAACAGGCAAAAACTGCAATTGCTTGGTATTGCTTGCATGATGATTGCTTCAAAATACG AGGAAATATGTGCTCCACAGGTGGAGGAGTTTTGCTACATTACTGATAACACATATTTCAAAGATGAGGTTCTGGAAATGGAATCTTCTGTTTTGAATTA CTTGAAATTTGAGATGACAGCTCCAACATCAAAATGTTTCTTAAGACGGTTTGCTAGAGCTGCTCAAGGAATCAACGAGGTTCCATCAATGCAATTGGAG TGCTTAGCGAATTACATCAGTGAACTATCTCTCCTGGAGTACAATATGCTATGCTACCCTCCATCAGTTGTCGCAGCTTCTTCTATTTTCTTAGCCAAGT TCATACTTTCACCGTCACAGAGACCATGGAATTCTACCTTGCAACATTACACACGGTATCAGCCAAGTGATCTACAAGACTGTGTTAAGGATCTCCATCG AATGTGTTGCGGGAGTTATGACTCTAATTTGCCTGCAATCAGGGATAAGTACAGTCAGCACAAGCAAAGAAGTTCTGCCCTGCAGCAATACCTGAGGAGT ACTTGCAAAAGCAAAGCTTGTAAGAAGAAGAGGATATACTGTTTGCTTACTCAGCCTCTTCCAATGGTCAGTTGGACGATGAAGCTCTGTACGGTTGTTC CGTCTCCTAGCCGATAA
AA sequence Show only first row Show all	>Lus10042739 pacid=23181780 polypeptide=Lus10042739 locus=Lus10042739.g ID=Lus10042739.BGIv1.0 annot-version=v1.0 MSTTTQTRRSSFSSSTTSSLAKKRHASASSSLKSTALAAGGSPPPPPPPPPPSPQTTEERLSEILLTAIEMPLRKGPNPPSLPALCFLFGTGSTKIAKLK KGPTSTASEINKVGFSANVVPAVVISSEAAACKATREVVPTTVTAVLASRDFNVSPSKSDQGSMSMDETMSTCDSFKSPDVEYIDNNDLLPGIDSINKKT LNNLFISDHHDENTVDGIINMDTDDKIVDLDTEFDDPQLCATIACDIYNHLRASETKKRPATDFMEKVQKDVNASMRAILVDWLVEVAEEYRLVPDTLYL TVNYIDRYLSGNVINRQKLQLLGIACMMIASKYEEICAPQVEEFCYITDNTYFKDEVLEMESSVLNYLKFEMTAPTSKCFLRRFARAAQGINEVPSMQLE CLANYISELSLLEYNMLCYPPSVVAASSIFLAKFILSPSQRPWNSTLQHYTRYQPSDLQDCVKDLHRMCCGSYDSNLPAIRDKYSQHKQRSSALQQYLRS TCKSKACKKKRIYCLLTQPLPMVSWTMKLCTVVPSPSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10042739 [exp]	0	1
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10022679 [exp]	1.0	0.9859
AT2G37420			ATP binding microtubule motor ...		Lus10025304 [exp]	2.4	0.9730
AT5G23910			ATP binding microtubule motor ...		Lus10027488 [exp]	2.4	0.9782
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10018608 [exp]	2.8	0.9680
AT3G63430			unknown protein		Lus10024836 [exp]	3.0	0.9650
AT2G22610			Di-glucose binding protein wit...		Lus10035954 [exp]	5.5	0.9679
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10039844 [exp]	6.9	0.9489
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10029700 [exp]	7.3	0.9673
AT3G15550			unknown protein		Lus10035906 [exp]	7.9	0.9672
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10012261 [exp]	8.8	0.9615

Compare expression of checked genes

Lus10042739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.