Plant FIBer expression Database

Lus10042743 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G01010 620 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029706
[exp]
825 / 0 AT5G01010 629 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G143700
[exp]
643 / 0 AT5G01010 618 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10042743 pacid=23181921 polypeptide=Lus10042743 locus=Lus10042743.g ID=Lus10042743.BGIv1.0 annot-version=v1.0
ATGGCATCCACAGAGGGCCTTATGCCCATAACCAGAAAATTCTTAGCTTCTTACTATGACAAGTACCCTTTTCCTCCATTATCTGATGATGTCTCGCGTC
TTTCTTCTGAGATACGCTCTATGATCCTTGATTTACTCAAGGATTCTCCTCCTTCTTCAGACGAGAGTTTGTTGGTACAGCAAACAGAGTGCCAGCCTCC
TCATAAAGTTGACGAGAATATGTGGAAGAATCGTGAACAGATGGAAGAAATTCTGTTCTTGCTTGAGAAACCACGCTGGCCTCATGCTCTTCAGCAGCCA
TCAACGTCCCATGACAGCGAACTTTCTACTACTCTTATGAGCATTCAGGATAAGGTTCAGAAGACTTTGAAGACACTGGAATCTTTTCAATCGAAGAATT
CTGAGCGTGTGTTCAATATTGTGATGACATACATGCCTCAGGATTTTCGAGGAACAATTATCCGATTGCAAAGGGAGAGATCAGAGAAGAATAAGCAAGC
AGATGTTACTGCATTGATTAGTTCTGGAGGAAGTATACACGATAAATATGCTCTACTTTGGAAGCAACAAATGGATAGGAGACGACAATTGGCTCAGCTT
GGTTCAGCAACAGGTGTATACAAAACTTTGGTGAAGTATTTGGTAGGAGTTCCAGAGGTTTTACTGGATTTCATTCAGCAGATCAATGACGATGAAGGGC
CCATGGAAGAGCAGAGACACCGATATGGACCACCTTTATACAGACTGACAACAATGATTCTCTTTGTTCGGGTTTTTATTTCACTTTCATGGAGTAGATA
CGATGCTGGTAAAATAAAGAAACATCACGTTGATGTACTGGAACAAGCTGTTTATGTCTACTCCAACGAGTTTATAAGGTTTATTTCCTTCATCAGTGAG
GTCTTTGCAAACTCCCCATTCTTTATTTCAGCTGAATCTGCTGGTGCAATAGAAGGAAGGAACAGTGATGATTACAAAGAAATCAGCATTCCTGCGGGGA
AGACTCATGAGGTTTTGTTGTCGGTGGACTCAGTTAACTCGTACATTGCTTGGGATTTCTCATTGACACAAGGAAAAATCAGCATGGACATTGGGTTTAG
TGTGGAGTACATAGATTCATCCAGCCAAAAGACCCTGATTTTACCGTACCGTCGTTGCGAGTCTGACCAGGGGAACTTCTGCACAGTGATGTCTGGAAAC
TACAAGTTAGTTTGGGATAATTCATATTCGAGCTTTTTCAAGAAGATGAAAGCCAAAAGATTGATTGGTGCAAACTATGTCAACAACAGGTTGTACGGTT
TAAGGTGGATTGCATTCCGCCGGTTGTGGAGACGGTTGAATCAGGCAGCGAAGCGAGTTAGGAGGAGGATAGCTCCGTTGGGTTGA
AA sequence
>Lus10042743 pacid=23181921 polypeptide=Lus10042743 locus=Lus10042743.g ID=Lus10042743.BGIv1.0 annot-version=v1.0
MASTEGLMPITRKFLASYYDKYPFPPLSDDVSRLSSEIRSMILDLLKDSPPSSDESLLVQQTECQPPHKVDENMWKNREQMEEILFLLEKPRWPHALQQP
STSHDSELSTTLMSIQDKVQKTLKTLESFQSKNSERVFNIVMTYMPQDFRGTIIRLQRERSEKNKQADVTALISSGGSIHDKYALLWKQQMDRRRQLAQL
GSATGVYKTLVKYLVGVPEVLLDFIQQINDDEGPMEEQRHRYGPPLYRLTTMILFVRVFISLSWSRYDAGKIKKHHVDVLEQAVYVYSNEFIRFISFISE
VFANSPFFISAESAGAIEGRNSDDYKEISIPAGKTHEVLLSVDSVNSYIAWDFSLTQGKISMDIGFSVEYIDSSSQKTLILPYRRCESDQGNFCTVMSGN
YKLVWDNSYSSFFKKMKAKRLIGANYVNNRLYGLRWIAFRRLWRRLNQAAKRVRRRIAPLG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G01010 unknown protein Lus10042743
[exp]
0 1
AT5G62570 Calmodulin binding protein-lik... Lus10043463
[exp]
4.0 0.9205
AT4G21470 ATFMN/FHY riboflavin kinase/FMN hydrolas... Lus10018906
[exp]
5.1 0.9059
AT3G55530 SDIR1 SALT- AND DROUGHT-INDUCED RING... Lus10002706
[exp]
5.7 0.9264
AT3G14910 unknown protein Lus10043078
[exp]
6.9 0.9121
AT2G26000 BRIZ2 BRAP2 RING ZnF UBP domain-cont... Lus10035023
[exp]
7.5 0.9260
AT4G14290 alpha/beta-Hydrolases superfam... Lus10021948
[exp]
8.3 0.9236
AT3G46590 ATTRP2, TRFL1 TRF-like 1 (.1.2.3) Lus10016527
[exp]
8.4 0.9185
AT4G32160 Phox (PX) domain-containing pr... Lus10002925
[exp]
8.8 0.9088
AT5G01010 unknown protein Lus10029706
[exp]
9.8 0.8867
AT3G27530 MAG4, GC6 MAIGO 4, golgin candidate 6 (.... Lus10035230
[exp]
11.5 0.9167

Lus10042743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.