Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10960 150 / 2e-43 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT2G32070 145 / 1e-41 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G80780 144 / 6e-41 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) AT1G15920 131 / 6e-36 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) AT3G44260 130 / 7e-36 AtCAF1a CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G06450 130 / 4e-35 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G61470 125 / 7e-34 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27820 125 / 2e-33 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G22250 122 / 1e-32 AtCAF1b CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G44240 117 / 2e-31 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029710 [exp] 541 / 0 AT5G10960 147 / 2e-42 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10029713 [exp] 526 / 0 AT5G10960 144 / 4e-41 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10007771 [exp] 363 / 2e-126 AT1G61470 170 / 5e-51 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10000327 [exp] 226 / 3e-72 AT1G06450 174 / 1e-51 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10035078 [exp] 217 / 7e-69 AT1G06450 168 / 2e-49 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10008043 [exp] 213 / 3e-67 AT1G06450 165 / 5e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10001651 [exp] 206 / 1e-63 AT1G61470 167 / 4e-49 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10017905 [exp] 203 / 2e-63 AT1G06450 162 / 5e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10035077 [exp] 194 / 7e-60 AT1G61470 162 / 6e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G038700 [exp] 182 / 2e-55 AT1G61470 182 / 8e-56 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.001G046700 [exp] 161 / 1e-47 AT2G32070 472 / 2e-170 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.003G181100 [exp] 158 / 2e-46 AT1G80780 468 / 1e-168 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) Potri.006G262500 [exp] 156 / 1e-45 AT2G32070 443 / 5e-159 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.018G020900 [exp] 155 / 3e-45 AT2G32070 441 / 2e-158 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.004G200400 [exp] 139 / 4e-39 AT5G22250 419 / 3e-149 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.009G161500 [exp] 134 / 3e-37 AT5G22250 387 / 1e-136 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G187200 [exp] 133 / 5e-37 AT2G32070 403 / 2e-143 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G205600 [exp] 122 / 2e-32 AT5G22250 302 / 4e-103 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.001G040400 [exp] 120 / 3e-32 AT5G22250 253 / 4e-84 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF04857 [flax] [poplar] CAF1 CAF1 family ribonuclease
Representative CDS sequence Show only first row Show all	>Lus10042746 pacid=23181819 polypeptide=Lus10042746 locus=Lus10042746.g ID=Lus10042746.BGIv1.0 annot-version=v1.0 ATGATTACATACGTTCGACAAGTGTGGGATTCGGATCTCCGGAAAGAGCTTGCAGTTCTGGAACAGGCGTTTCCAAAGTACCCAGTACTCAGTGTGGATT GCGATGGATTCCTGCTCAAAACACCAAGAAACCCTACTGGCGATCTTTGGTATAGCGATCTCAAACACAAAGTCGACCAAACCCACATCACCCAACTCAG CGTCGCTCTTTCCGACCACGGCGGAACCGTCTTCTGCACCTGGAAGTTCAATTTTGAGTTTGATGTTGACGAAGATGTTCACACCAAAGACACGGTCGCA TTTCTGAAGGGTCAGGGAATTGATTTCCAAAAGCATAGAGCGGATGGCATCAAAAGGACTCGATTTGGTGCCCAATTCTGCAACTTGATGGCGAGCAAAA CCACTCCTCTGACATGGGTCACCTTCCATGGGTTGTATGATTTTGCTCACATCCTCAAGGTGCTTACCAACAACACACCCATGCCTGGCACGCCTTCTGG CTTTAGAGACTTGTTGGGATATTCTTTTGAGGAGATTGTCGATCTCAAGGTGATGGCCAAGTTTTGCGATGGAATTTCTGATATGGAGGAGGTTGGGTTG CAGAAACTGGCAGATTTGCTGAGCATCGAGAGGGAGGATGGTGAAGCTTTACATGAAGCTGGTTCTGACAGTTTACTCACTGCAATGGTGTTTTCCAACA TGAGAACAAGATTCCAAGCTGATCAACATCATGTATATAGTGATTATATCTATGGAATCACTGAAAGGATTGGAAGAAGCCCTACCATCCAGGTTCGCTA CTCGCACCGATGGTTGTGCCAGCCGCTGCTGCCACTGCCCATTCCATGCTATCGTCCCCGTTATCATCCTTATCCTCGTCCTCCTCGTCGATGTCTTCTT CTTCCCCTGCATACCCCTTCCAGAATGGGTCAGTACTGA
AA sequence Show only first row Show all	>Lus10042746 pacid=23181819 polypeptide=Lus10042746 locus=Lus10042746.g ID=Lus10042746.BGIv1.0 annot-version=v1.0 MITYVRQVWDSDLRKELAVLEQAFPKYPVLSVDCDGFLLKTPRNPTGDLWYSDLKHKVDQTHITQLSVALSDHGGTVFCTWKFNFEFDVDEDVHTKDTVA FLKGQGIDFQKHRADGIKRTRFGAQFCNLMASKTTPLTWVTFHGLYDFAHILKVLTNNTPMPGTPSGFRDLLGYSFEEIVDLKVMAKFCDGISDMEEVGL QKLADLLSIEREDGEALHEAGSDSLLTAMVFSNMRTRFQADQHHVYSDYIYGITERIGRSPTIQVRYSHRWLCQPLLPLPIPCYRPRYHPYPRPPRRCLL LPLHTPSRMGQY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10960			Polynucleotidyl transferase, r...		Lus10042746 [exp]	0	1
AT5G10960			Polynucleotidyl transferase, r...		Lus10029710 [exp]	2.2	0.8291
AT5G04900		NOL	NYC1-like (.1)		Lus10034874 [exp]	7.9	0.8407
AT1G54350		ABCD2	ATP-binding cassette D2, ABC t...		Lus10001839 [exp]	9.9	0.8546
AT1G03160		FZL	FZO-like (.1.2)		Lus10000656 [exp]	10.1	0.8440
AT3G21810	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10015103 [exp]	12.3	0.8000
AT4G03200			catalytics (.1.2)		Lus10003165 [exp]	15.0	0.7861
AT4G30920		AtLAP2, LAP2	leucyl aminopeptidase 2, Cytos...		Lus10035823 [exp]	21.2	0.8225
AT5G59250			Major facilitator superfamily ...		Lus10040772 [exp]	28.3	0.7568
AT1G64430			Pentatricopeptide repeat (PPR)...		Lus10001823 [exp]	29.5	0.8299
AT5G15390			tRNA/rRNA methyltransferase (S...		Lus10032993 [exp]	36.9	0.7937

Compare expression of checked genes

Lus10042746 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.