Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21650 1560 / 0 SECA2 Preprotein translocase SecA family protein (.1.2.3) AT4G01800 626 / 0 AtcpSecA, AGY1, SECA1 Arabidopsis thaliana chloroplast SecA, Albino or Glassy Yellow 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029715 [exp] 1984 / 0 AT1G21650 1660 / 0.0 Preprotein translocase SecA family protein (.1.2.3) Lus10009973 [exp] 608 / 0 AT4G01800 1589 / 0.0 Arabidopsis thaliana chloroplast SecA, Albino or Glassy Yellow 1 (.1.2) Lus10038031 [exp] 546 / 4e-179 AT4G01800 1517 / 0.0 Arabidopsis thaliana chloroplast SecA, Albino or Glassy Yellow 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G078000 [exp] 1647 / 0 AT1G21650 1753 / 0.0 Preprotein translocase SecA family protein (.1.2.3) Potri.014G112266 [exp] 633 / 0 AT4G01800 1707 / 0.0 Arabidopsis thaliana chloroplast SecA, Albino or Glassy Yellow 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF07517 [flax] [poplar] SecA_DEAD SecA DEAD-like domain CL0023 [flax] [poplar] PF01043 [flax] [poplar] SecA_PP_bind SecA preprotein cross-linking domain CL0023 [flax] [poplar] PF07516 [flax] [poplar] SecA_SW SecA Wing and Scaffold domain
Representative CDS sequence Show only first row Show all	>Lus10042747 pacid=23181906 polypeptide=Lus10042747 locus=Lus10042747.g ID=Lus10042747.BGIv1.0 annot-version=v1.0 ATGGAAACTACTTCTCTTCCTTTATTCAACCCTTCCTTTCTTACCCGAAAATCGCCAAATGAATCCCCATCTCCACTCTTCTTCAGACCCATCTCTGTTA CACCCTTTTCAAAAACCTACTGCTATCCTTGTATTCATTTGCTCCATCCAAGTCGTCCCAGCTCAAGTACCCAAGTAAAAGCTTCACTCAAGGAGAAATT GGGTGAACTGAGAGACAGGGTAGCTGATCTGACGAGCTTAAACCAGTGGGTTGTTAAGGATTACTATCGTCTAGTTGAGTCTGTTAATGCATTTGAGCCG CAAATGCAGAAACTTTCTGATGAGCAGTTGATGGCCAAAACTGGGGAGTTTCGGACGCGGCTGAAAGTAGGGGAAACGCTGGCAGACATTCAAGCTGAGG CTTTCGCTGTTGTTCGGGAAGCTGCAAGACGGAAACTTGGGATGCGCCATTTTGACGTGCAGATTATTGGTGGTGCTGTGCTTCATGATGGATCAATTGC TGAGATGAAAACAGGAGAGGGGAAAACATTAGTTTCAACGTTAGCTGCATATCTTAATGCACTGACTGGTGAGGGTGTCCATATTGTTACTGTGAATGAT TACTTGGCTCAACGTGATGCTGAGTGGATGGGCCGTGTTCATCGCTTCTTGGGTCTTTCTGTTGGTCTCATACAGGAGCTTGGTTTTGATTATCTACGAG ATAATCTTTCTGGAAACAGTGTGCAACTTGTAATGAGATGGCCAAAGCCCTTTCATTTTGCGATAGTTGATGAAGTGGATTCAGTTCTCATCGATGAAGG AAGAAACCCCTTGTTAATCAGTGGTGAGGCTGATAAAGATGCTGCAAGATATCCGGTTGCTGCTAAAGTAGCTGAGCTTCTTTTAAAGGAAATTCACTAC AAAGTGGAGCTTAAAGATAATTCAGTGGAGTTGACGGAGGAGGGCATAGGTCTAGCTGAGATGGCTCTCGAAACAAATGATCTTTGGGATGAAAATGATC CCTGGGCTAGATTTGTATTAAATGCTCTGAAAGCTAAAGAATTCTATAGACGTGATGTACAATATATGTTGACAGGAAGAGCGGAGGATAAAAAGAGATG GTCTGATGGAATCCACCAGGCAGTAGAGGCAAAGGAAGGTTTGGAAATTGAGGCTGATACTGTAGTGGTTGCACAAATAACATACCAATCACTGTTTAAA CTCTACCCGAAGCTGTCAGGAATGACTGGAACTGCAAAAACTGAAGAAAAGGAGTTCCTAAAAATGTTCCACGTTCCAGTTATCGTGGTGCCAACAAATC TGCATAACATTCGCAAAGATTTGCCTATACAAGCTTTTGCAACTGCACGTGGGAAATGGGAGCATGCACGCCAAGAAGTTAAATACATGTTTCAGCAAGG CCGGCCTGTTTTAGTAGGGACAACAAGCGTTGAGAACTCTGAGTACCTGTCTGGTCTACTTAAAGAGTGGAAGATCCCCCACAATGTATTAAATGCAAGA CCTAAGTATGTTGCAAGGGAAGCTGAGATTGTTGCTCAGGCAGGGAGAAAAAATGCTATCACTATTTCCACAAATATGGCGGGTAGAGGCACTGATATTA TTTTGGGTGGGAACCCAAAGATGCTTGCAAAAGAAGTCATAGAAGACAGCTTGCTTTCTTATCTAACCCATGACTTACCAACTACTGATATCGATGGAGA GGCACTATCTGACAAGGTATTATCAAAGATACGTGTTGGTACAAAATCATTAGCTTTACTAGCAAAGACGTCATTAATGGCCAAATATGTGGGTAAAAGT GAAGGCAAGGACTGGACATATCAAGAAGCAAAGTCAATGATATCAAAATCTGTGGAAATGAGCGAGTCATTGGGCATGGAAGAGCTACAAAAGCTTGCTG ATGAGGAGTCTGAGATGTATCCCCTTGGACCAAATATAGCACTCTCTTATCTATCAGTGCTTAAGGACTGTGAAGTGCATTGCTCAAATGAGGGATGTGA GGTGAAACAACTAGGCGGCCTTCATGTTATCGGAACATCTTTGCATGAGTCACGGAGAATAGATAACCAGCTTCGTGGAAGAGCAGGAAGGCAAGGAGAT CCTGGATCCACACGATTCATGGTGAGCTTGCAGGATGAAATGTTTCAAAAGTTCAATTTTGATACCCAGTGGGCTGTGAGCCTCATCTCAAAGATCACTG ATGATGAAGACTTACCCATTGAGGGTGATTTTATCGTCAGACAGCTCTTAGGGCTGCAAATCAACGTGGAGAAGTACTTCTTTGGCATCAGAAAGAGCCT GGTTGATTTTGATGAAGTTTTAGAGGTGCAAAGGAAACACGTTTATGACCTTCGTCAAGTCATTTTAACAGGCGACAGTGAAAGTTGTAGCCAGCACATT TTCCAGTATATGCAGGCAATTGTTGACAACATCGTATTCCACAATGCTGATCCCACAAAGCATCCACAATACTGGAATACGGGCATGATCTTAAAGGAGT ATATCTACGTTGGAGGAAGTCTGTTGGATGGGATCACTGAAGAAACCTTGCTGCAATCCCTCATACAATCACAGGAACCCAGTTCTATAGACATCAACAA TTTTTGCCTTCCAAACATGCCGAGGGCACCAAATACATTAAGAGGAATTCGGAAGAAGTGTTCTTTACTGAAGCGTTGGCTTTGCATTTGTTCCGATGAT TCAACCAAGATTGGGAGATACAGGATGACAACCAATCTTCTCCGGAAGTACCTGGGAGACTTTCTTATCGCTTCATATTGTGGTGTCATAGAAGAGTCGG GATATGATGATACATATATCAAAGAGATCGAGAGAGCAGTTCTCCTGAAGACCCTGTATTGTTTCTGGAGGGATCATCTTGTAAACATGAACCAACTCAG TTCCGCGGTGAACGTGAGAAGCTTCGGTCATAGAAATCCTCTTGAAGAATACAAAATCGATGGGTGCAGATTCTTCATTTCAATGCTGAGTGCAACTAGA AGAATGAGCATTGACGCACTGTTTCAGTACTGGTCATCTCCCATGGAATCTCAAGAACTCTTTGTATAA
AA sequence Show only first row Show all	>Lus10042747 pacid=23181906 polypeptide=Lus10042747 locus=Lus10042747.g ID=Lus10042747.BGIv1.0 annot-version=v1.0 METTSLPLFNPSFLTRKSPNESPSPLFFRPISVTPFSKTYCYPCIHLLHPSRPSSSTQVKASLKEKLGELRDRVADLTSLNQWVVKDYYRLVESVNAFEP QMQKLSDEQLMAKTGEFRTRLKVGETLADIQAEAFAVVREAARRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHIVTVND YLAQRDAEWMGRVHRFLGLSVGLIQELGFDYLRDNLSGNSVQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEADKDAARYPVAAKVAELLLKEIHY KVELKDNSVELTEEGIGLAEMALETNDLWDENDPWARFVLNALKAKEFYRRDVQYMLTGRAEDKKRWSDGIHQAVEAKEGLEIEADTVVVAQITYQSLFK LYPKLSGMTGTAKTEEKEFLKMFHVPVIVVPTNLHNIRKDLPIQAFATARGKWEHARQEVKYMFQQGRPVLVGTTSVENSEYLSGLLKEWKIPHNVLNAR PKYVAREAEIVAQAGRKNAITISTNMAGRGTDIILGGNPKMLAKEVIEDSLLSYLTHDLPTTDIDGEALSDKVLSKIRVGTKSLALLAKTSLMAKYVGKS EGKDWTYQEAKSMISKSVEMSESLGMEELQKLADEESEMYPLGPNIALSYLSVLKDCEVHCSNEGCEVKQLGGLHVIGTSLHESRRIDNQLRGRAGRQGD PGSTRFMVSLQDEMFQKFNFDTQWAVSLISKITDDEDLPIEGDFIVRQLLGLQINVEKYFFGIRKSLVDFDEVLEVQRKHVYDLRQVILTGDSESCSQHI FQYMQAIVDNIVFHNADPTKHPQYWNTGMILKEYIYVGGSLLDGITEETLLQSLIQSQEPSSIDINNFCLPNMPRAPNTLRGIRKKCSLLKRWLCICSDD STKIGRYRMTTNLLRKYLGDFLIASYCGVIEESGYDDTYIKEIERAVLLKTLYCFWRDHLVNMNQLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATR RMSIDALFQYWSSPMESQELFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21650		SECA2	Preprotein translocase SecA fa...		Lus10042747 [exp]	0	1
					Lus10026392 [exp]	9.5	0.7058
AT3G53010			Domain of unknown function (DU...		Lus10042636 [exp]	37.9	0.6192
AT5G43470		HRT, RCY1, RPP8	RECOGNITION OF PERONOSPORA PAR...		Lus10025625 [exp]	41.3	0.6603
AT2G30480			unknown protein		Lus10019109 [exp]	41.4	0.6316
					Lus10005948 [exp]	97.7	0.6078
AT1G64060		RBOHAP108, ATRB...	ARABIDOPSIS THALIANA RESPIRATO...		Lus10028755 [exp]	115.5	0.5958
AT1G63980			D111/G-patch domain-containing...		Lus10017524 [exp]	128.6	0.5790
AT3G23600			alpha/beta-Hydrolases superfam...		Lus10000668 [exp]	145.1	0.5549
AT1G05280			Protein of unknown function (D...		Lus10039692 [exp]	146.9	0.5338
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Lus10021642 [exp]	150.0	0.5527

Compare expression of checked genes

Lus10042747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.