Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33270 583 / 0 AtCDC20.1, CDC20.1 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) AT4G33260 579 / 0 AtCDC20.2, CDC20.2 cell division cycle 20.2, Transducin family protein / WD-40 repeat family protein (.1.2) AT5G26900 515 / 6e-176 AtCDC20.4 cell division cycle 20.4, Transducin family protein / WD-40 repeat family protein (.1) AT5G27080 513 / 9e-175 AtCDC20.3 cell division cycle 20.3, Transducin family protein / WD-40 repeat family protein (.1) AT5G27570 504 / 5e-172 AtCDC20.5 cell division cycle 20.5, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02220 420 / 2e-139 zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein (.1) AT5G27945 400 / 1e-131 Transducin/WD40 repeat-like superfamily protein (.1) AT4G22910 308 / 2e-95 CCS52A1, FZR2 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) AT5G13840 301 / 9e-93 FZR3 FIZZY-related 3 (.1.2) AT4G11920 294 / 3e-90 FZR1, CCS52A2 FIZZY-RELATED 1, cell cycle switch protein 52 A2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042765 [exp] 766 / 0 AT4G33270 542 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10034687 [exp] 708 / 0 AT4G33270 620 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10037593 [exp] 679 / 0 AT4G33270 728 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10006851 [exp] 673 / 0 AT4G33270 728 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10006853 [exp] 670 / 0 AT4G33270 729 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10029718 [exp] 570 / 0 AT4G02220 349 / 2e-117 zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein (.1) Lus10037595 [exp] 328 / 7e-107 AT4G33270 402 / 2e-141 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10040282 [exp] 312 / 6e-94 AT5G13840 685 / 0.0 FIZZY-related 3 (.1.2) Lus10043009 [exp] 303 / 6e-94 AT4G33270 344 / 1e-114 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G021800 [exp] 613 / 0 AT4G33270 767 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.013G048900 [exp] 611 / 0 AT4G33270 766 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.016G118400 [exp] 598 / 0 AT4G33270 771 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.016G068700 [exp] 540 / 0 AT4G33270 607 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.002G201200 [exp] 441 / 1e-147 AT4G02220 511 / 0.0 zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein (.1) Potri.015G110300 [exp] 325 / 3e-102 AT4G33270 363 / 5e-122 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.010G202100 [exp] 306 / 1e-94 AT5G13840 707 / 0.0 FIZZY-related 3 (.1.2) Potri.008G057500 [exp] 294 / 4e-90 AT5G13840 705 / 0.0 FIZZY-related 3 (.1.2) Potri.001G112700 [exp] 291 / 3e-89 AT4G22910 705 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Potri.003G119500 [exp] 288 / 1e-87 AT4G22910 702 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0175 [flax] [poplar] TRASH PF01753 [flax] [poplar] zf-MYND MYND finger CL0175 [flax] [poplar] PF04194 [flax] [poplar] PDCD2_C Programmed cell death protein 2, C-terminal putative domain
Representative CDS sequence Show only first row Show all	>Lus10042748 pacid=23182038 polypeptide=Lus10042748 locus=Lus10042748.g ID=Lus10042748.BGIv1.0 annot-version=v1.0 ATGGAAGCCACTAGTAGTTCCGGGGCGGATACCATGGAAGACCTCAAGGGACTTCGGATTTCTTCCCTTGACAGTGACGAAGACGACGATGCTTTGGAAG AAGGAAGTAAGAAACTGAATGTCGAAGATGAGGACGACGATGAAGAGGAAGATGAAGAGCTAGAACCAGTAATGCTAGGGTTTCTGGAGAAGCCTGAGCA TCCTTGGTCTATTCTTCGCCAGTCATTCCCCAGCAAGGCTGGTGGTGCCCCGGCGTGGCTGGACGCTGTTAATTTGCCCTCTGGAAATCATTCTCTTTGT GATACATGTGGGAAGCCTCTTAGATTCGTGCTTCAGGTATATGCTCCAATTACAGAAAAGGAATCAACATACCACCGGACGTTATTTGTGTTTATGTGCC CCAAAATGTCTTGTCTTCTTCGAGATCAACATGAGCAGTGGAAACGTAAACCTGAACAGCCTTCTAGGAGTGTAAAGGTTTTTCGTTGCCAATTGCCTCT TGTCAATCCCTTTTACTCAAGTGAGACCCCGCGACATGATGGCAGGGACAAGCCATCTCAACCTGGAGGTAGTTTATCCGCTGTTCTCTGTGACCGTTGT GGTACTTGGAAAGGAGATAAACTTTGCGGTAGATGCAAGAAAGTACACTACTGCTCAGAAAGGCATCAGCTTAATCTTGTGCTCACAGCAAATGGTTCCC ATTTCACAGTTCTTACCAAAAAGTTGTGGCCAGAATATGAGATAGTGGATGAAGATGAAGCTGAATTCGGTGAAAAATTGTCTGATGATACTGAGAACGC CATGGCTCTTGTATCCATGAATGAAAAAAAGGACTCAATGAAGTCCGTCATTGACGGGTTTAAGGCAGATATTGACAAAAGGACATTTGCAAATTTTGAA CAACGCAGAGCCAGAGCTCCTGACCAAGTTCTGAGGTATTGCCGCAGTCCGACTGCGAAACCCCTCTGGCCAATTTTCAGTGGCCGTCTACCAAAGGCTG ATGTTCCCAGTTGCAAGTACTGTGGCGGTCGTATGATCTTCGAATTTCAGATATTGTCTACTTTGCTATACTACTTCAAAGTGGATAATGAAGTGAACTC TCTTGACTGGGCTACTGTGGTGGTATACACTTGCGAATCTTCATGTGATGCCTCTGTTGCATACAAAGAAGAATCAGTCTACTTGCCACTTGGATATGGA TTTCATTCCTTGGCAAGGGTTCAACATGAAAAGAAGCTTCATAACTCAGATCAAATCAAGAGTGATGGTCCTTTTAGCCAGATTCGCACGAAGAGAAGTT CTTCCAAGGACAACTTGGATAGGTTTATTCCGAACCGGTCGGCCACGGACATGGATTACGCCCTCTCCATGATAACAGGAGGTTGGAAAGAGGAGGAGAA TCCAGTCCCAAGCTTTGCTTCAAGCGAGGCGTACAAGAGACTGTTGGCGGAGACTATGGGCTTGAGTCGTACGAGGATTTTCACGTTCAAGAACAAGCCT CCCACTCCTGTTGAGTTGATTCCGCATCAGCATACCTGTTCAGATTCTTCTCTTCCTCACCAGGCAAAACCAGCCAAGCCTCGCAGACACATTCCTCAGA CTCCAGAGAGCAAATTGGACGCTCCAGACATTGTGGATGATTTTTACTTCAACGTACTGGACTGGAGCATCAATAATGTTCTGGCGATTGCACTAGGCTG TACAGTTTATCTGTGGGATGCTTCAAACGGCTCTACTTACGAGCTTGTCACCGTTGATGAAGAGCTTGGCCCTGTTAGGAGCGTTAAATGGGCTCCTGAT GGCTGCCATATCGCCCTCGGTTTGAGCAACTCCCAAGTCCAATTGTGGGATTCTATTTGTAACAAACTGGTACAAACATTGAAAGGCGGCCACAGAAGCC TAGTTGGTTCAATGGATTGGAACAGACACATCCTGACCACTGGAGGAATGGACGGAAGGATCCTAAACACCGATATCAGAACCACGGAACACGTTGTAAT GGAATTCCGGGGCCACACACAAGAAGTCTGCGGACTGAAATGGTCGGATTCCGGTCAACAATTAGCCAGTGGAGGCAACGACAATCTCATCCACATCTGG GACATATCCATGGCTGCTGCTGCTTCTTCTTCCAACCCCCAACGGACTCCGTATCTCCACAGGCTTGAGAACCATACCTCAGCAGTAAAGGCTCTAGCTT GGTGTCCATTCCAACGAAACTTGCTCGCTACAGGAGGCGGCGAAGAAGACAAGACGATCAAGTTCTGGAACACCACTACGGGTGCGTGCTTGAACTCGGT GAACACGGGCTCCCCAGTTTGTGCATTGCTGTGGAACACGAACGAGAGGGAACTCTTAAGCTCTCATGGGTTCCCCGGGAATCAGCTTACCTTGTGGAAG TATCCATCCATGTTGAAGATCGCAGAGCGTACTGGCCATACTTCCAGTGTCCTGTTCATGGCTCAGAGTCCAGATGGATGCACGGTGGCATCCGCTGCAG GGGATCAAACTCTGAGGGTCTGGTACATGTTTGGGGATCCTAAAGCTGCTGCTGCAAAGAAGAAGAAAGCGAATCCGGACTCTTGGGTGAATCGCAGCCG GTGCACCATCCGGTGA
AA sequence Show only first row Show all	>Lus10042748 pacid=23182038 polypeptide=Lus10042748 locus=Lus10042748.g ID=Lus10042748.BGIv1.0 annot-version=v1.0 MEATSSSGADTMEDLKGLRISSLDSDEDDDALEEGSKKLNVEDEDDDEEEDEELEPVMLGFLEKPEHPWSILRQSFPSKAGGAPAWLDAVNLPSGNHSLC DTCGKPLRFVLQVYAPITEKESTYHRTLFVFMCPKMSCLLRDQHEQWKRKPEQPSRSVKVFRCQLPLVNPFYSSETPRHDGRDKPSQPGGSLSAVLCDRC GTWKGDKLCGRCKKVHYCSERHQLNLVLTANGSHFTVLTKKLWPEYEIVDEDEAEFGEKLSDDTENAMALVSMNEKKDSMKSVIDGFKADIDKRTFANFE QRRARAPDQVLRYCRSPTAKPLWPIFSGRLPKADVPSCKYCGGRMIFEFQILSTLLYYFKVDNEVNSLDWATVVVYTCESSCDASVAYKEESVYLPLGYG FHSLARVQHEKKLHNSDQIKSDGPFSQIRTKRSSSKDNLDRFIPNRSATDMDYALSMITGGWKEEENPVPSFASSEAYKRLLAETMGLSRTRIFTFKNKP PTPVELIPHQHTCSDSSLPHQAKPAKPRRHIPQTPESKLDAPDIVDDFYFNVLDWSINNVLAIALGCTVYLWDASNGSTYELVTVDEELGPVRSVKWAPD GCHIALGLSNSQVQLWDSICNKLVQTLKGGHRSLVGSMDWNRHILTTGGMDGRILNTDIRTTEHVVMEFRGHTQEVCGLKWSDSGQQLASGGNDNLIHIW DISMAAAASSSNPQRTPYLHRLENHTSAVKALAWCPFQRNLLATGGGEEDKTIKFWNTTTGACLNSVNTGSPVCALLWNTNERELLSSHGFPGNQLTLWK YPSMLKIAERTGHTSSVLFMAQSPDGCTVASAAGDQTLRVWYMFGDPKAAAAKKKKANPDSWVNRSRCTIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10042748 [exp]	0	1
AT4G02220			zinc finger (MYND type) family...		Lus10029718 [exp]	2.4	0.7686
					Lus10028270 [exp]	3.2	0.7979
AT3G08800		SIEL	SHORT-ROOT interacting embryon...		Lus10000343 [exp]	10.7	0.7437
AT5G53770			Nucleotidyltransferase family ...		Lus10032691 [exp]	19.1	0.7667
AT3G58590			Pentatricopeptide repeat (PPR)...		Lus10020138 [exp]	20.5	0.6952
AT3G54460			SNF2 domain-containing protein...		Lus10039526 [exp]	25.9	0.7497
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Lus10023549 [exp]	27.5	0.7181
AT5G10710			unknown protein		Lus10026943 [exp]	28.0	0.6430
AT5G38520			alpha/beta-Hydrolases superfam...		Lus10023788 [exp]	28.6	0.6951
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Lus10016387 [exp]	31.3	0.7193

Compare expression of checked genes

Lus10042748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.