Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20240 214 / 2e-70 MADS PI, PISTILLATA PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) AT5G23260 132 / 1e-37 MADS ABS, TT16, AGL32 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) AT3G54340 122 / 6e-34 MADS AP3, ATAP3 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) AT2G22540 121 / 1e-33 MADS AGL22, SVP SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) AT4G24540 120 / 2e-33 MADS AGL24 AGAMOUS-like 24 (.1) AT5G15800 120 / 2e-33 MADS AGL2, SEP1 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) AT3G02310 120 / 2e-33 MADS AGL4, SEP2 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) AT3G57390 119 / 6e-33 MADS AGL18 AGAMOUS-like 18 (.1.2) AT3G58780 119 / 7e-33 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G42830 118 / 2e-32 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029719 [exp] 370 / 1e-131 AT5G20240 221 / 3e-73 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Lus10017388 [exp] 134 / 1e-38 AT5G23260 220 / 4e-72 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10010184 [exp] 134 / 2e-38 AT5G23260 218 / 3e-71 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10033187 [exp] 126 / 1e-35 AT3G54340 275 / 4e-94 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Lus10034663 [exp] 125 / 7e-35 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10031960 [exp] 122 / 6e-34 AT3G54340 275 / 5e-94 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Lus10010630 [exp] 121 / 8e-34 AT3G54340 279 / 1e-95 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Lus10005080 [exp] 117 / 5e-32 AT3G02310 372 / 1e-131 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10003125 [exp] 114 / 1e-31 AT1G24260 290 / 9e-101 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G182200 [exp] 248 / 2e-83 AT5G20240 244 / 2e-82 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Potri.002G079000 [exp] 241 / 5e-81 AT5G20240 238 / 2e-80 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Potri.012G125600 [exp] 138 / 5e-40 AT5G23260 183 / 2e-57 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.005G118000 [exp] 134 / 1e-38 AT3G54340 226 / 9e-75 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Potri.015G125501 [exp] 134 / 1e-38 AT5G23260 192 / 6e-61 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.007G073000 [exp] 126 / 8e-36 AT5G23260 256 / 3e-86 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.002G028400 [exp] 122 / 1e-34 AT3G54340 229 / 7e-77 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Potri.012G100200 [exp] 121 / 4e-34 AT1G26310 149 / 2e-44 CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) Potri.007G017000 [exp] 120 / 2e-33 AT3G54340 208 / 1e-67 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Potri.015G098400 [exp] 119 / 3e-33 AT4G22950 136 / 4e-40 AGAMOUS-like 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10042749 pacid=23181971 polypeptide=Lus10042749 locus=Lus10042749.g ID=Lus10042749.BGIv1.0 annot-version=v1.0 ATGGGTAGGGGGAAGATTGAGATAAAGAGGATAGAGAACGTGAGCAACAGGCAAGTAACTTATTCCAAGAGGAGGAATGGTTTGATCAAGAAGGCCAAAG AGATCACAGTTCTATGCGATGCTCACGTCTCCCTCATCATCTTCGCCAGCTCCGGCAAGATGCACGACTTCTGCAGCCTCCCCACCACACTGTCTGAAAT ACTGGAGAAGTACCACAAGCAGTCTGGGAAAAGGCTCTGGGATGCTAAACATGAGAACCTGAGCAATGAGATTGATAGGATGAAGAAGGAGAATGACAAC ATGCAGATTGAACTCAGGCACCTAAGAGGAGAGGACATAACATCATTAAACTACAAAGAGCTGATGATTTTGGAGGAAGGGCTTCAGAATGGGATCTCCA GGGTCACTGATCTCCAGAGCGAGTACCGTGACCTCATGAAGAGGAAAGGGAAGATGGCTGAAGATGAGAACCAGCGCCTTCACTTCATCCTGATGCAGCA ACAGCAGCAGGAGGAAGAAATGAAGAGGCTGCAGGAGATGACAGTAATGGAAGGATATCACCACCATTCTCATCCTAATCATCATCAACACAGATCTTCT GCTGCTGCTATGAATATGAGGGACAACAATAATAACAACAATAACAGTGATCATCAGATGCCTTTCTCCTTAATTCCATTGCAGCCTAATCTTCATTAG
AA sequence Show only first row Show all	>Lus10042749 pacid=23181971 polypeptide=Lus10042749 locus=Lus10042749.g ID=Lus10042749.BGIv1.0 annot-version=v1.0 MGRGKIEIKRIENVSNRQVTYSKRRNGLIKKAKEITVLCDAHVSLIIFASSGKMHDFCSLPTTLSEILEKYHKQSGKRLWDAKHENLSNEIDRMKKENDN MQIELRHLRGEDITSLNYKELMILEEGLQNGISRVTDLQSEYRDLMKRKGKMAEDENQRLHFILMQQQQQEEEMKRLQEMTVMEGYHHHSHPNHHQHRSS AAAMNMRDNNNNNNNSDHQMPFSLIPLQPNLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20240	MADS	PI, PISTILLATA	PISTILLATA, K-box region and M...		Lus10042749 [exp]	0	1
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Lus10005080 [exp]	9.1	0.8528
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10004637 [exp]	12.9	0.8496
AT5G15800	MADS	AGL2, SEP1	SEPALLATA1, AGAMOUS-like 2, K-...		Lus10034663 [exp]	16.0	0.8490
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10015765 [exp]	18.3	0.8481
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10026679 [exp]	20.5	0.8478
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10003125 [exp]	22.4	0.8477
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000558 [exp]	24.2	0.8476
AT5G35770		SAP	STERILE APETALA, Transducin/WD...		Lus10006385 [exp]	25.5	0.7464
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10022473 [exp]	25.9	0.8476
AT4G10950			SGNH hydrolase-type esterase s...		Lus10023070 [exp]	27.5	0.8476

Compare expression of checked genes

Lus10042749 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.