Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08500 378 / 4e-128 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT4G08480 353 / 1e-116 MEKK2, MAPKKK9 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1) AT4G08470 339 / 2e-113 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1) AT4G12020 335 / 1e-104 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) AT1G53570 246 / 3e-77 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT1G63700 241 / 3e-73 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT5G66850 224 / 9e-68 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT1G09000 214 / 1e-64 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT1G54960 213 / 2e-64 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT3G06030 197 / 4e-58 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042698 [exp] 492 / 2e-173 AT4G08500 518 / 5e-179 MAPK/ERK kinase kinase 1 (.1) Lus10029657 [exp] 489 / 3e-172 AT4G08480 520 / 9e-180 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1) Lus10003745 [exp] 444 / 9e-159 AT4G08500 400 / 4e-137 MAPK/ERK kinase kinase 1 (.1) Lus10028038 [exp] 438 / 2e-152 AT4G08500 494 / 1e-169 MAPK/ERK kinase kinase 1 (.1) Lus10032279 [exp] 250 / 2e-76 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10024645 [exp] 249 / 6e-76 AT1G63700 905 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10027496 [exp] 249 / 8e-76 AT1G63700 855 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10014976 [exp] 243 / 5e-74 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10002096 [exp] 243 / 6e-73 AT2G13680 1077 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G172200 [exp] 451 / 2e-157 AT4G08500 421 / 6e-141 MAPK/ERK kinase kinase 1 (.1) Potri.002G088900 [exp] 441 / 2e-153 AT4G08500 411 / 4e-137 MAPK/ERK kinase kinase 1 (.1) Potri.005G062500 [exp] 251 / 1e-78 AT1G53570 566 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.007G106800 [exp] 249 / 7e-78 AT1G53570 582 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.001G102900 [exp] 253 / 1e-77 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.012G143900 [exp] 252 / 8e-77 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.015G146700 [exp] 251 / 1e-76 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.003G129000 [exp] 242 / 2e-73 AT1G63700 850 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.002G129100 [exp] 212 / 4e-63 AT5G66850 441 / 5e-145 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.007G039800 [exp] 210 / 7e-63 AT5G66850 511 / 3e-173 mitogen-activated protein kinase kinase kinase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10042750 pacid=23181690 polypeptide=Lus10042750 locus=Lus10042750.g ID=Lus10042750.BGIv1.0 annot-version=v1.0 ATGCATGAGGAAAGGGAGCAACGAGAGCAACAAGGCATGGAATTAGGGTTCAACATCTCTCCCAATAGGAGGAGGATTATCACCCAATGGGAGAAAGGGG TTCTTCTCGGGCGTGGGTCGCATGGCTTGGTGTATGAGGGAGTATCTCATGACGGATTCTTCTTTGCTATCAAAGAGGTTTCGTTGCTTGATCAAGGAAG CCAGGCAATGCAAATTGAGCAGGAGATTGCACTCTTAAGTCAGTTTGAACATGAGAACATTGTCCAGTATTATGGCACAGACAAGGATGAATCAAACTTG TATATTTTTTTGGAGCTTGTGACTAAAGGTTCCATTCTGAGTCTTTATCAGAGATATCATCTGCGAGATCCTCAAGTATCAGCTTACACAAGGCAAATTC TTCATGGTTTGAAGTACCTTCATGACCGCAATGTGGTTCATAGGGATATCAAGTGCGCAAACATACTAGTAGATGCAAATGGGTCAGCGAAACTTGCAGA TTTTGGACTGGGGAAGTCAACCCAGCTGGACTGTTTCGAATCAATAAAGGGGACTGCTTCTTGGATGGCTCCTGAGGTTGTCAACCGAAAGAACCAAGGA TATGGGCTTCCAGCTGATATTTGGAGCCTCGGATGCACCGTGCTGGAGATGTTAACTCGTCGGATTCCATATTCAGATTTCGAACTCATGAATGTGTTAT TTAAGATCGCACGGGGTGTGCCTCCCACGGTTCCTGATTCCCTATCAAAGGATGCACGAGATTTCATCCTGCAGTGCCTCCAAGTTAATCCAGAAGGCCG TCCCACTGCTGCTCGCCTCTTGGACCATCCATTTGTGCAGCGACCACTGCAAACATCGTCATCGGGTTCTGCATCTTCCCCGGAGACGCCATTAGAAGTA CACAATCAAGCTTGA
AA sequence Show only first row Show all	>Lus10042750 pacid=23181690 polypeptide=Lus10042750 locus=Lus10042750.g ID=Lus10042750.BGIv1.0 annot-version=v1.0 MHEEREQREQQGMELGFNISPNRRRIITQWEKGVLLGRGSHGLVYEGVSHDGFFFAIKEVSLLDQGSQAMQIEQEIALLSQFEHENIVQYYGTDKDESNL YIFLELVTKGSILSLYQRYHLRDPQVSAYTRQILHGLKYLHDRNVVHRDIKCANILVDANGSAKLADFGLGKSTQLDCFESIKGTASWMAPEVVNRKNQG YGLPADIWSLGCTVLEMLTRRIPYSDFELMNVLFKIARGVPPTVPDSLSKDARDFILQCLQVNPEGRPTAARLLDHPFVQRPLQTSSSGSASSPETPLEV HNQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Lus10042750 [exp]	0	1
AT5G64810	WRKY	ATWRKY51, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10035841 [exp]	1.0	0.9272
AT1G29380			Carbohydrate-binding X8 domain...		Lus10015259 [exp]	2.8	0.9265
AT1G69880		ATH8	thioredoxin H-type 8 (.1)		Lus10036698 [exp]	7.7	0.8940
AT2G28500	AS2	LBD11	LOB domain-containing protein ...		Lus10036130 [exp]	8.1	0.9006
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10027279 [exp]	8.4	0.8883
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10039702 [exp]	8.5	0.9238
AT2G37460			nodulin MtN21 /EamA-like trans...		Lus10025308 [exp]	8.8	0.8733
AT1G34050			Ankyrin repeat family protein ...		Lus10024844 [exp]	9.2	0.8896
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10039701 [exp]	9.2	0.8960
AT2G23140			RING/U-box superfamily protein...		Lus10032023 [exp]	11.0	0.8753

Compare expression of checked genes

Lus10042750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.