Plant FIBer expression Database

Lus10042751 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027054
[exp]
74 / 4e-15 AT3G57120 213 / 2e-64 Protein kinase superfamily protein (.1)
Lus10011518
[exp]
60 / 3e-10 AT3G57120 173 / 6e-49 Protein kinase superfamily protein (.1)
Lus10011517
[exp]
59 / 8e-10 AT3G57120 182 / 2e-52 Protein kinase superfamily protein (.1)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10042751 pacid=23181904 polypeptide=Lus10042751 locus=Lus10042751.g ID=Lus10042751.BGIv1.0 annot-version=v1.0
ATGTCAATTGCCTTGGAGGAAGTTGCAGATGAAGTGCAAACGCCTAGTTGCCCATTTTGCTTCCTTCCTGCACCGTTCTGTATATCCGACCTTTTGGCAC
AGTTGTCCACCCAAGGTAATTTCTTGATTTATTCCGAAATCCCCTCATTCGCACCAAGTGAGAGGGAGGAAGTTCTGCGTCAGGGGCACTGCAAATTGAA
CTTTCTCTGGCAGCTTCCTAGCAAGCTCTGCTCAAAAGGGTGCTTGAAAAATCTGATGGCAGAGCAAAAACATGATCTTGAGGATGATGATGATTCCAAG
GACGTCTCACTATTCCCGCATCACACTTTTCCGCCATACCATCCAAAACCCCGCCAAATCCAACCCAAATACGTCCCGGCAACTCCTAGAAATAACTTGT
TATATCATGTCGCCACAACAACTTCTTCCTCTTCCAGATCAGCTTCCTCCTCCTCCAAATCAGCTTCTTCATCATCAGTTTCCAGCTTCTTCTTCACCTT
CTCTTCTTCTTCATCCTCTTCTTCTTCCTCCAACCCTGCAGGCTCTACCCTCCAACCACAATCCTACCGTGGAAATTTCCGCGGAAAAGAAGCCATCGGC
TTCCGCTGTACCTTACCTCCGGACGTTGACCGCGACAGACTTACGAACCTTCTATCTCTCATTGGCACCATACGTCATATCAATGTGGTCCAGCTAATAG
GAGCTTCAATTGCCGAAAACGAACCCTCCCTATGTTAA
AA sequence
>Lus10042751 pacid=23181904 polypeptide=Lus10042751 locus=Lus10042751.g ID=Lus10042751.BGIv1.0 annot-version=v1.0
MSIALEEVADEVQTPSCPFCFLPAPFCISDLLAQLSTQGNFLIYSEIPSFAPSEREEVLRQGHCKLNFLWQLPSKLCSKGCLKNLMAEQKHDLEDDDDSK
DVSLFPHHTFPPYHPKPRQIQPKYVPATPRNNLLYHVATTTSSSSRSASSSSKSASSSSVSSFFFTFSSSSSSSSSSNPAGSTLQPQSYRGNFRGKEAIG
FRCTLPPDVDRDRLTNLLSLIGTIRHINVVQLIGASIAENEPSLC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10042751
[exp]
0 1
AT1G76360 Protein kinase superfamily pro... Lus10030742
[exp]
1.0 0.9232
AT5G40010 ASD, AATP1 ATPase-in-Seed-Development, AA... Lus10015354
[exp]
2.0 0.9218
AT3G57120 Protein kinase superfamily pro... Lus10029721
[exp]
4.9 0.8825
AT5G05190 Protein of unknown function (D... Lus10029013
[exp]
6.6 0.8540
AT3G57120 Protein kinase superfamily pro... Lus10011517
[exp]
6.9 0.8712
AT3G44480 COG1, RPP10, RP... recognition of peronospora par... Lus10005813
[exp]
7.2 0.8521
AT1G71690 Protein of unknown function (D... Lus10003512
[exp]
7.7 0.8726
AT2G45760 BAL, BAP2 BON ASSOCIATION PROTEIN 1-LIKE... Lus10024505
[exp]
7.7 0.8495
AT2G28500 AS2 LBD11 LOB domain-containing protein ... Lus10036130
[exp]
9.0 0.8837
AT1G34050 Ankyrin repeat family protein ... Lus10024844
[exp]
9.5 0.8764

Lus10042751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.