Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12010 122 / 2e-30 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G19470 116 / 3e-29 Leucine-rich repeat (LRR) family protein (.1) AT5G44870 110 / 2e-26 TTR1, LAZ5 tolerance to Tobacco ringspot virus 1, LAZARUS 5, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G45250 96 / 2e-21 RPS4 RESISTANT TO P. SYRINGAE 4, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G19510 95 / 4e-21 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G45060 94 / 6e-21 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G19530 91 / 5e-20 disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G45230 87 / 2e-18 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17880 87 / 2e-18 CSA1 constitutive shade-avoidance1, disease resistance protein (TIR-NBS-LRR class) (.1) AT4G36150 81 / 2e-16 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029722 [exp] 630 / 0 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10016029 [exp] 98 / 5e-22 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10012247 [exp] 92 / 7e-21 AT5G45230 92 / 2e-20 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015350 [exp] 87 / 2e-18 AT4G12010 422 / 2e-127 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10001537 [exp] 81 / 2e-16 AT5G44510 175 / 1e-45 target of AVRB operation1 (.1) Lus10023051 [exp] 76 / 1e-14 AT4G12010 415 / 2e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10042778 [exp] 72 / 1e-13 AT4G12010 185 / 1e-48 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10003749 [exp] 70 / 9e-13 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10018616 [exp] 69 / 2e-12 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G070001 [exp] 130 / 2e-33 AT5G17680 481 / 5e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070565 [exp] 130 / 2e-33 AT5G17680 482 / 3e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069600 [exp] 126 / 6e-32 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070479 [exp] 121 / 3e-30 AT5G17680 285 / 2e-80 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070350 [exp] 117 / 7e-30 AT5G45200 152 / 3e-40 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G070651 [exp] 120 / 1e-29 AT5G17680 630 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 112 / 5e-27 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 107 / 3e-25 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.005G030318 [exp] 93 / 2e-20 AT1G69550 673 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.005G031899 [exp] 90 / 2e-19 AT1G69550 469 / 6e-141 disease resistance protein (TIR-NBS-LRR class) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042753 pacid=23181720 polypeptide=Lus10042753 locus=Lus10042753.g ID=Lus10042753.BGIv1.0 annot-version=v1.0 ATGGAAGCTCTTTCCAGACTCAACTTCTGGGGCATGAACCACTGCAAAAGGCTCAAGTACCTTCCTAGCAACATTGGAAAGATGAAATCTCTCAAGACCT TTTCGGTCTCAGGCTGCTCGAGGCTTGAGGCTTTACCTTCCAGCATCAAATTACTGACTCAGCTTCAAAAGCTTGTCCTGAGCAACTGCAAACGCCTTAG GAGTTTAACGGAACTTCCTCAGGGTATTAGTATGTTGAATGCCAATGACTGCATTTCACTGGAGAGGCTGCCTTCTCCATCTATAGTTTCGATGGGGAAT GTCGTGGTACCGAAAAACTGTCATATCCAAATGTTTTCGTTCGCCAACTGTTCGAAGTTGTATCGGAATGCTGACAGCAACGTGGAGGCTGACTCATTCT TCAGGATTCATCATGCAGCGATATCAGCTGGGATTCATTCATTACCTTCCAATAGCATCTGTTACCCTGCAAGAAGCATCCCAAGGTGGTTTAGATATCA AAGCAATGGTTCCTCTATAACCATCAAACTAGCTCCAAACTGGCTGAATAACGATTTCTTGAGATTCGCACTGAGCGCTGTCATCGCAACCAAAGACCGA AAGACATTTGGTTCAACTGAGGTAGGGTGTCAATGCAGTCTTAGAACAGCCAGCGGAGATCGACATGATGTGCTGCGTTGTAGGTTGGGGTTTTCCGCAA TGCATGGAAAGAGGGATTTCACGTGTGCTGATCATGTGGTGATCAGATACGACTCCAGTCTCTGTCAAAGACTCTTCCATAAGCAGAAGAATTCACAGAT TTACCGGAGTGCAACGTTCAAGTTCTACCCGGAGCAGACGGATTCGAGGTACTTCCCGGCATGGTTTCCGGTTCGGAAGTGTGGGGTTCATCCACTGTAT GGGCAGTATGAGGTAGAAAGCAGCAGTAGCAGGTTTTCACCCTTGGTTCAGCCCGGCTCTCCTACGGAATCGACTTCGTTGCGACTTTACGGTGGAAGGT AA
AA sequence Show only first row Show all	>Lus10042753 pacid=23181720 polypeptide=Lus10042753 locus=Lus10042753.g ID=Lus10042753.BGIv1.0 annot-version=v1.0 MEALSRLNFWGMNHCKRLKYLPSNIGKMKSLKTFSVSGCSRLEALPSSIKLLTQLQKLVLSNCKRLRSLTELPQGISMLNANDCISLERLPSPSIVSMGN VVVPKNCHIQMFSFANCSKLYRNADSNVEADSFFRIHHAAISAGIHSLPSNSICYPARSIPRWFRYQSNGSSITIKLAPNWLNNDFLRFALSAVIATKDR KTFGSTEVGCQCSLRTASGDRHDVLRCRLGFSAMHGKRDFTCADHVVIRYDSSLCQRLFHKQKNSQIYRSATFKFYPEQTDSRYFPAWFPVRKCGVHPLY GQYEVESSSSRFSPLVQPGSPTESTSLRLYGGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12010			Disease resistance protein (TI...		Lus10042753 [exp]	0	1
AT4G16990		RLM3	RESISTANCE TO LEPTOSPHAERIA MA...		Lus10042752 [exp]	2.0	0.8595
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10012870 [exp]	2.6	0.8810
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10029021 [exp]	6.0	0.8806
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10034244 [exp]	8.5	0.8659
AT5G02290		NAK	Protein kinase superfamily pro...		Lus10003972 [exp]	10.0	0.8573
AT1G27170			transmembrane receptors;ATP bi...		Lus10020524 [exp]	10.4	0.8329
AT2G45910			U-box domain-containing protei...		Lus10036363 [exp]	10.5	0.8337
AT1G14860		ATNUDT18	nudix hydrolase homolog 18 (.1...		Lus10003713 [exp]	12.0	0.8260
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Lus10010959 [exp]	12.7	0.8240
AT4G25800			Calmodulin-binding protein (.1...		Lus10029861 [exp]	13.4	0.8180

Compare expression of checked genes

Lus10042753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.