Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16630 882 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT5G60990 232 / 8e-68 DEA(D/H)-box RNA helicase family protein (.1) AT1G16280 226 / 2e-65 SWA3, AtRH36 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) AT5G63120 206 / 5e-57 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G58570 204 / 3e-56 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G55150 200 / 8e-56 DEA(D/H)-box RNA helicase family protein (.1) AT2G47330 201 / 2e-54 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G42520 199 / 2e-54 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G31970 196 / 7e-54 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT3G58510 196 / 1e-53 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029596 [exp] 243 / 2e-70 AT1G16280 674 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10006326 [exp] 241 / 5e-70 AT1G16280 673 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10031761 [exp] 233 / 3e-68 AT5G60990 679 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10031182 [exp] 231 / 1e-67 AT5G60990 674 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10030075 [exp] 210 / 2e-58 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015187 [exp] 206 / 2e-56 AT2G33730 1083 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016207 [exp] 204 / 3e-56 AT2G42520 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018941 [exp] 207 / 6e-56 AT1G77030 1043 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) Lus10028644 [exp] 206 / 1e-55 AT1G77030 1057 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G241300 [exp] 978 / 0 AT4G16630 829 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.007G068800 [exp] 238 / 3e-70 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.006G249100 [exp] 235 / 4e-69 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G013900 [exp] 233 / 1e-68 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.008G084700 [exp] 221 / 3e-63 AT1G16280 616 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Potri.013G158000 [exp] 215 / 8e-61 AT1G55150 322 / 3e-104 DEA(D/H)-box RNA helicase family protein (.1) Potri.019G130900 [exp] 214 / 3e-60 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.012G045800 [exp] 205 / 4e-56 AT2G33730 994 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G194600 [exp] 206 / 9e-56 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G038300 [exp] 200 / 9e-56 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10042754 pacid=23181805 polypeptide=Lus10042754 locus=Lus10042754.g ID=Lus10042754.BGIv1.0 annot-version=v1.0 ATGGCTCGCTGGGCCTTTTTCCAACCTCCTAGCGATGAAGAGGTTGAATACTCGCATGATGAAGAAGATGGAGAAGTTGAAGAAGAGCCGCAGCATAAAC TACGAAGAAGAAGACTAGAGCAAGAGAAGCAGGAGGAGGAAGAGAACGATGATAGCAGCGGCAGCGCCGATGAAAAAGATGAGGATGATGAATTACAGGA GGAGGAAGAAGAAGAAGAAGACGAAGGAGAGGATGGAGACGATAAACCTTCCATTAAGGGTACGCAGTCGCCTTGGGACTTCGCCACTTTCTCAGAATCC GTGGCGGAGGAGCACGCTCGCCGGAGAACCACCTCCATTGACGAAAAAATCTCCAAAGCTCGCCAGCAGCTCTCCGTTCCCCTCACCTACTCCAGTGACG AGGAAGACGCTGGTGGCTCAGATGCCGAATCTGATAAACAAGAAGACTATAGACACGAGGACGATGATGATGATGCTACTACTGTGGATGAGCCCAAGCC CTTCTTTGCATCATCTGAAGGAACTTCATTTCATGCAAATTCATTCATGGATCTTAATTTGTCACGGCCGTTGCTTCGTGCCTGTGAGGTTTTAGGTTAT ACTAAGCCTACTCCAATCCAGGCTGCTTGCATACCTTTGGCACTTGGTGGGCGTGATATATGTGGTAGTGCCATCACTGGTTCCGGAAAGACAGCTGCCT TTGCACTGCCTACGCTGGAAAGGTTGCTTTTCCGTCCAAAACGTGTCCAAGCAATACGAGTCCTTATACTAACTCCGACCAGGGAGCTTGCTGTTCAGGT TCATAGCATGACTGAAAAACTTGCTCAGTTTACTGATATCAGATGTTGCTTGATTGTTGGTGGGTTATCAACGAAGGTTCAAGAAGCTGCATTGAGAACA ATGCCTGACATCGTTGTTGCTACCCCAGGGCGTATGATTGATCATTTAAGGAATTCTATGTCAGTGGATTTGGATGATCTTGCAGTTATGATCCTTGATG AAGCAGATCGCCTTCTGGAGCTTGGTTTCAGTACTGAAATTCAAGAACTGGTTCGGCTATGCCCCAAAAGGAGGCAAACCATGCTGTTCTCGGCCACAAT GACTGAAGAAGTTAATGAGCTTATAAAACTCTCTCTATCTAAACCATTGCGTCTCTCAGCTGATCCAACTGCAAAACGACCATCTACTTTGACCGAAGAG GTGGTCAGGATACGCAGGATTAGTGAGGGAAATCAGGAATCTGTTCTTCTGGCGTTATGCTCAAAAACTTTTACATCAAAAGTGATTATTTTCAGTGGGA CTAAGCAAGCTGCACATAGGCTGAAGATTCTGTTTGGACTAGCAGGCTTTAAAGCAGCTGAGCTTCATGGAAACCTCACTCAAGTCCAGCGTCTAGATGC TTTGGAGCTATTCAGAAAACAGGAAGTTGATTTTCTGATTGCAACAGATGTAGCTGCTCGTGGACTTGACATTGTTGGTGTCGAAACAGTTATTAACTTC GCTTGTCCTCGTGATCTTACTAGTTATGTTCATAGGGTGGGTCGTACTGCCAGAGCTGGTAGAGTGGGTTATGCTGTCACTTTTCTGACTGATAATGATC GCTCTCTTTTGAAAGCCATTGCAAAAAGAGTCGGTTCAAAGTTGAAGAGTCGTATTGTCGCAGAGCAATCTATTACTAAATGGGCTCAGATAATCGACCA AATGGAAGATCAGGTAGCTGAGGTTCTTCAAGAAGAGAGGGAAGAAATGGCCATAAGAAAAGCTGAAATGCAAGTCACAAAGGCTGAGAATATGATTAAC CACAGGGAAGAAATTTTCTCTCGCCCCAAAAGAACGTGGTTTGAATCAGAAAAACAGAAGAACCTTTTGGCAAAAGAAGCGAAGACATCGGCTGGAAATG GAAATAGGACTGGCAATGACGTGATGAGCGCCCAACAAGCTGAAGACCTGAAAATGAAGGAAAAGAGGAAGAGAGAGCGTGAGAAAAACATGCCTCGAAG GCAGCGTCGCAAACTACAAGCAGCTAGAGAAATGCTGGAGGACGAAGAGGAAACGAAACCAGAGCGTAATAAAAAAGGCAAGAAAGAAGAGGAAAAGGCT GGACTGTCACTGGTGGACCTAGGATATATGCGCGCAAAAGCAGTTAAAGCTGCAAAGAGGGCGAAAGATGCGGGGAAGTTTGTCGAGAAGAAGGCCCCGA ACAAAGGAAAACGTTCCGGACAGAGGAATCAATCAAGGACAGAAGAGATGAAGGATCTGTTTCAGACAGACATAAGTGATAGAAAGGTGAAAAAGGGCAG CAGCATTGGACTGTCAAAGAAGCCAAAGAGTTCATTCAAGAGCAAATCACGTTGTCCTCTGAGCAAAATGGTTTTTTTGTCGAAAGTGAACTCGCAATTG ATCAAGCAGTAG
AA sequence Show only first row Show all	>Lus10042754 pacid=23181805 polypeptide=Lus10042754 locus=Lus10042754.g ID=Lus10042754.BGIv1.0 annot-version=v1.0 MARWAFFQPPSDEEVEYSHDEEDGEVEEEPQHKLRRRRLEQEKQEEEENDDSSGSADEKDEDDELQEEEEEEEDEGEDGDDKPSIKGTQSPWDFATFSES VAEEHARRRTTSIDEKISKARQQLSVPLTYSSDEEDAGGSDAESDKQEDYRHEDDDDDATTVDEPKPFFASSEGTSFHANSFMDLNLSRPLLRACEVLGY TKPTPIQAACIPLALGGRDICGSAITGSGKTAAFALPTLERLLFRPKRVQAIRVLILTPTRELAVQVHSMTEKLAQFTDIRCCLIVGGLSTKVQEAALRT MPDIVVATPGRMIDHLRNSMSVDLDDLAVMILDEADRLLELGFSTEIQELVRLCPKRRQTMLFSATMTEEVNELIKLSLSKPLRLSADPTAKRPSTLTEE VVRIRRISEGNQESVLLALCSKTFTSKVIIFSGTKQAAHRLKILFGLAGFKAAELHGNLTQVQRLDALELFRKQEVDFLIATDVAARGLDIVGVETVINF ACPRDLTSYVHRVGRTARAGRVGYAVTFLTDNDRSLLKAIAKRVGSKLKSRIVAEQSITKWAQIIDQMEDQVAEVLQEEREEMAIRKAEMQVTKAENMIN HREEIFSRPKRTWFESEKQKNLLAKEAKTSAGNGNRTGNDVMSAQQAEDLKMKEKRKREREKNMPRRQRRKLQAAREMLEDEEETKPERNKKGKKEEEKA GLSLVDLGYMRAKAVKAAKRAKDAGKFVEKKAPNKGKRSGQRNQSRTEEMKDLFQTDISDRKVKKGSSIGLSKKPKSSFKSKSRCPLSKMVFLSKVNSQL IKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16280		SWA3, AtRH36	SLOW WALKER 3, Arabidopsis tha...		Lus10042754 [exp]	0	1
AT1G34360			translation initiation factor ...		Lus10032318 [exp]	2.6	0.8644
AT5G13480		FY	Transducin/WD40 repeat-like su...		Lus10026837 [exp]	3.0	0.8720
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10022044 [exp]	9.0	0.8883
AT3G04820			Pseudouridine synthase family ...		Lus10009188 [exp]	10.8	0.8688
AT4G19610			nucleotide binding;nucleic aci...		Lus10040636 [exp]	11.5	0.8726
AT3G05380	MYB	ALY2, ATALY2	ARABIDOPSIS THALIANA ALWAYS EA...		Lus10029910 [exp]	16.4	0.8666
AT1G40087			Plant transposase (Ptta/En/Spm...		Lus10035798 [exp]	16.5	0.8532
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Lus10026725 [exp]	19.9	0.8564
AT2G28600			P-loop containing nucleoside t...		Lus10034162 [exp]	22.3	0.8638
AT1G26170			ARM repeat superfamily protein...		Lus10000328 [exp]	24.1	0.8176

Compare expression of checked genes

Lus10042754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.