Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77290 348 / 5e-122 Glutathione S-transferase family protein (.1.2) AT3G62760 57 / 9e-10 ATGSTF13 Glutathione S-transferase family protein (.1) AT1G49860 55 / 1e-08 ATGSTF14 glutathione S-transferase (class phi) 14 (.1) AT2G30860 52 / 1e-07 GLUTTR, ATGSTF7, ATGSTF9 glutathione S-transferase PHI 9 (.1.2) AT2G30870 51 / 1e-07 ERD13, ATGSTF4, ATGSTF10 EARLY DEHYDRATION-INDUCED 13, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 10, glutathione S-transferase PHI 10 (.1) AT1G02940 50 / 3e-07 ATGSTF5 glutathione S-transferase (class phi) 5 (.1) AT5G17220 49 / 1e-06 GST26, TT19, ATGSTF12 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) AT1G02920 46 / 5e-06 ATGST11, GST11, ATGSTF8, ATGSTF7 ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 11, glutathione S-transferase 7 (.1) AT1G02930 46 / 9e-06 ATGST1, GST1, ERD11, ATGSTF3, ATGSTF6 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) AT2G47730 45 / 2e-05 GST6, ATGSTF5, ATGSTF8 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029723 [exp] 483 / 4e-175 AT1G77290 392 / 3e-139 Glutathione S-transferase family protein (.1.2) Lus10020735 [exp] 71 / 2e-14 AT2G30860 334 / 4e-118 glutathione S-transferase PHI 9 (.1.2) Lus10029815 [exp] 70 / 3e-14 AT2G30860 332 / 2e-117 glutathione S-transferase PHI 9 (.1.2) Lus10020736 [exp] 64 / 7e-12 AT2G30860 308 / 6e-108 glutathione S-transferase PHI 9 (.1.2) Lus10029816 [exp] 63 / 1e-11 AT2G30860 308 / 1e-107 glutathione S-transferase PHI 9 (.1.2) Lus10001419 [exp] 58 / 9e-10 AT2G30860 297 / 3e-103 glutathione S-transferase PHI 9 (.1.2) Lus10023511 [exp] 52 / 9e-08 AT5G17220 240 / 2e-80 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) Lus10004151 [exp] 52 / 1e-07 AT2G30860 194 / 1e-62 glutathione S-transferase PHI 9 (.1.2) Lus10040393 [exp] 48 / 2e-06 AT3G03190 263 / 1e-89 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G182000 [exp] 397 / 3e-141 AT1G77290 414 / 4e-148 Glutathione S-transferase family protein (.1.2) Potri.002G015200 [exp] 54 / 2e-08 AT3G03190 208 / 4e-68 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.017G138800 [exp] 54 / 2e-08 AT5G17220 265 / 1e-90 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) Potri.002G015100 [exp] 51 / 1e-07 AT3G03190 196 / 2e-63 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.014G132200 [exp] 49 / 6e-07 AT3G62760 295 / 2e-102 Glutathione S-transferase family protein (.1) Potri.002G207672 [exp] 49 / 6e-07 AT3G62760 302 / 2e-105 Glutathione S-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10042756 pacid=23181743 polypeptide=Lus10042756 locus=Lus10042756.g ID=Lus10042756.BGIv1.0 annot-version=v1.0 ATGCAGCTATACCACCATGCTTTCTCCATAGATAGCCAGAAAGTGAGGCTAGCTTTGGAAGAGAAGGGGATTGACTATACTTCAAACCATGTGAATCCTA TAACAGCCAAGAATCTGGATGCTTCGTTTTTCAGGATGAACCCTAGTGCAAGGCTCCCCGTCTTCCAAAATGGTTCCCATATCATCTTCGAAACAATCGA GATAATCCAGTACATAGAAAGGATCGCATTCGTCTCCACAGGCGCCAACGACATGCTATTCAGCAACAGAGAAGTTGTTGAATGGATGAAGAAGATACAG AAATGGAACCCCAAGTTCTTTACTCTTTCACATGTCCCGGAAAAATACCGCCTCCACGTCTCCAAGTTCACAAGGCGAGTGCTGATAGCTCGGATGGCCG AATCTTCTGATCTAGCCAGTGCTTACCACCGGAAGCTGAAAGAGACGTACGAAACAGAAGAGAAGCTGAAAACTCCGGAAGTTGTAAAACGAAGCACTGA GCACCTAGTTAGACTTCTTGATGAAGTAGAGACAAAGCTAGGGGAAACAGCGTACTTAGCTGGCGAAGACTTTTCATTGGCAGATGTAATGCTGATCCCG GTGCTTGCGAGGTTGGTACTGTTGAATTTGGAAGACGAGTATATACGAACGAGGCCGAACGTAGCTGAGTACTGGGAAGTGGTGAAGCAAAGACCGAGTT ATAGAAACGTGATTGGGAAGTACTTCAATGGATGGAGGAAATACAAGACGTTGATGAAAACTTGGTGTTTGGTCCGTTTCAGAAGTCAGTTCAAGATATA CTGA
AA sequence Show only first row Show all	>Lus10042756 pacid=23181743 polypeptide=Lus10042756 locus=Lus10042756.g ID=Lus10042756.BGIv1.0 annot-version=v1.0 MQLYHHAFSIDSQKVRLALEEKGIDYTSNHVNPITAKNLDASFFRMNPSARLPVFQNGSHIIFETIEIIQYIERIAFVSTGANDMLFSNREVVEWMKKIQ KWNPKFFTLSHVPEKYRLHVSKFTRRVLIARMAESSDLASAYHRKLKETYETEEKLKTPEVVKRSTEHLVRLLDEVETKLGETAYLAGEDFSLADVMLIP VLARLVLLNLEDEYIRTRPNVAEYWEVVKQRPSYRNVIGKYFNGWRKYKTLMKTWCLVRFRSQFKIY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77290			Glutathione S-transferase fami...		Lus10042756 [exp]	0	1
AT1G61770			Chaperone DnaJ-domain superfam...		Lus10020062 [exp]	2.0	0.8676
AT1G52342			unknown protein		Lus10043217 [exp]	5.3	0.8393
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10011063 [exp]	7.3	0.8805
AT1G77290			Glutathione S-transferase fami...		Lus10029723 [exp]	9.8	0.8593
AT1G69580	GARP		Homeodomain-like superfamily p...		Lus10036758 [exp]	13.2	0.8638
AT2G41110		ACAM-2, ATCAL5,...	calmodulin 2 (.1.2)		Lus10021487 [exp]	14.0	0.8701
AT4G32870			Polyketide cyclase/dehydrase a...		Lus10000573 [exp]	14.0	0.8686
AT3G57810			Cysteine proteinases superfami...		Lus10037002 [exp]	15.5	0.8393
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10036674 [exp]	16.5	0.8557
AT1G51340			MATE efflux family protein (.1...		Lus10027367 [exp]	16.7	0.7874

Compare expression of checked genes

Lus10042756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.