Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07590 696 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G15480 174 / 1e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80270 171 / 3e-46 PPR596 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) AT4G02820 129 / 4e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G60770 125 / 1e-30 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15590 122 / 2e-29 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G01990 117 / 6e-28 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20710 107 / 8e-25 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G02150 107 / 1e-24 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02370 104 / 1e-23 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029724 [exp] 1051 / 0 AT1G07590 691 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012112 [exp] 174 / 4e-47 AT1G80270 659 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Lus10031004 [exp] 171 / 2e-46 AT1G80270 532 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Lus10010430 [exp] 162 / 3e-43 AT1G80270 651 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Lus10042574 [exp] 135 / 8e-34 AT4G02820 565 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021053 [exp] 127 / 2e-31 AT1G02370 494 / 3e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024781 [exp] 115 / 2e-27 AT1G02150 599 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013047 [exp] 115 / 2e-27 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009787 [exp] 114 / 1e-26 AT1G02150 600 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G030900 [exp] 786 / 0 AT1G07590 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G039600 [exp] 177 / 2e-48 AT1G80270 654 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Potri.016G036100 [exp] 163 / 1e-43 AT1G80270 634 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Potri.003G193600 [exp] 148 / 2e-38 AT1G80270 442 / 9e-149 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Potri.005G208900 [exp] 140 / 9e-36 AT4G02820 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G063300 [exp] 119 / 1e-28 AT2G20710 345 / 1e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G157400 [exp] 117 / 6e-28 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G120900 [exp] 116 / 1e-27 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G079600 [exp] 111 / 4e-26 AT1G60770 701 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G132700 [exp] 111 / 5e-26 AT2G20710 387 / 2e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10042757 pacid=23181807 polypeptide=Lus10042757 locus=Lus10042757.g ID=Lus10042757.BGIv1.0 annot-version=v1.0 ATGCGTGTGTTGGCTCTATTGGGTCAGCGTATGTTCTTTCAAGCAGTTGATCGAACAATTTCCATCGCCCGCATTCCCCTCTGCAGTGTTCCTTACTGTA TCGCATCTCTCGACAGTGAGGCAACAACTAATGTTTCCTTGGAAAGGATCTCGGGAGCACAGGTTCAGGCTGATCAACCTAATTGTCTATCCTTTAGAAT CGAGAAGCTTCCCAAGGGAGTTCCTGTTGTATCTGCCTTCCAAAGCTGGATGGGCGAGGGATTACCGGTTCACAGAGGAGATATCTTCCATGCTATTAAC CGACTTAGGAAGCTCAAAATGAACAAACGTGCCCTTGAGGTGATGGAGTGGATAATAAGGGAGAGACCATACAGTCCAAAGGAACTTGACTACTCATATC TGTTGGAATTTACTTGCAAGCTACATGGGATAGCCCATGCTGAGAAGCTGTTCCCTCGTGTGCCGCCTGAGTTCCAGAACGAGTTGCTTTACAACAATCT CGTGATTGCATGCTTGGACAAAGGTGTCTTGAGGCTCTCACTCGAATACATGAAAAAGATGAGGGAACTGGGACATCACATTTCATACTTGGTCTTCAAT CGCCTTATTATCCACCTTGCTACCCCTGGCCGCAGAAAATCGATCCCGAAACTCCTTTCTCAAATGAGGGCAGATAAAGTTCCCCCCCACGCCTCAACTT ACAACATCCTGATGAAAATGGAAGCCAACGAGCATAACATAGAAGGGTTGCTCAAGGTATTTACAGATATGAAACGATCAGAGGTAGAACCAAATGAAAT ATCATTCTGCATATTGGCCACCGCTCATGCTGTGGCAAGATTGTATACCGCTGCTCAAGAATATGTTGAAGCTGTGGAGAAGACCCGTACGGGGAAGAAT TGGTCGACACTTGATGTTTTGATCATGTTATATGGGTATTTAGGGAAGGAGAAAGAGCTGGAGAGAACTTGGGGCATTGTGCAACAGCTTGAAAATATTA GGTCCAAGAGTTACATACTTGCAATTGAAGCCTTTGGTAGAATTGGTCGGATCGATCGCTCCACGGAGCTGTGGTCAGAGATGAAGTCACTGAAAGAGCT AAATTTGACTGAGCAGTTCAATTCCATCTTATCCGTTCACTGCAGGCACGGGCTCATAAAAAAAGCGACCGCGATTTTCAGGGAAATGGAGGCTAGGGGG TGCAAGGCGAATGCCATAACTTTTCGACATCTTGCTTTGGGTTGTTTGAAAGCCGACTTGGTGGAAGAATCATTGAAGACACTGGAGATGGGATCGAAGC TCACAGCAACGCGGAAGGTTAAGAACTCCACGCCGTGGCTGGAGACTAGTCTTTCTCTCGTTGAAATTTTTGCAGAGAAGGGTGATGTGGTGAATGCTGA AAAGTTGTTTGAAGAACTGAGCAAAGCTAAGTATATAAGATATACGTTTGTGTACAATACTCTAATTAAAGCTTATGTGAAGGCTAGAATTCACAATCCT AATCTATTAAGGAGAATGATTTTAGGGGGTGCAAGGCCAGATGCTGAGACCTATAGCCTGTTGAAACTTGCTGAGCAGTTCAGTAACTGA
AA sequence Show only first row Show all	>Lus10042757 pacid=23181807 polypeptide=Lus10042757 locus=Lus10042757.g ID=Lus10042757.BGIv1.0 annot-version=v1.0 MRVLALLGQRMFFQAVDRTISIARIPLCSVPYCIASLDSEATTNVSLERISGAQVQADQPNCLSFRIEKLPKGVPVVSAFQSWMGEGLPVHRGDIFHAIN RLRKLKMNKRALEVMEWIIRERPYSPKELDYSYLLEFTCKLHGIAHAEKLFPRVPPEFQNELLYNNLVIACLDKGVLRLSLEYMKKMRELGHHISYLVFN RLIIHLATPGRRKSIPKLLSQMRADKVPPHASTYNILMKMEANEHNIEGLLKVFTDMKRSEVEPNEISFCILATAHAVARLYTAAQEYVEAVEKTRTGKN WSTLDVLIMLYGYLGKEKELERTWGIVQQLENIRSKSYILAIEAFGRIGRIDRSTELWSEMKSLKELNLTEQFNSILSVHCRHGLIKKATAIFREMEARG CKANAITFRHLALGCLKADLVEESLKTLEMGSKLTATRKVKNSTPWLETSLSLVEIFAEKGDVVNAEKLFEELSKAKYIRYTFVYNTLIKAYVKARIHNP NLLRRMILGGARPDAETYSLLKLAEQFSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07590			Tetratricopeptide repeat (TPR)...		Lus10042757 [exp]	0	1
AT4G35320			unknown protein		Lus10022985 [exp]	2.6	0.8395
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10027195 [exp]	3.7	0.8384
AT5G14210			Leucine-rich repeat protein ki...		Lus10022340 [exp]	4.0	0.8131
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Lus10015549 [exp]	4.5	0.8176
AT1G27200			Domain of unknown function (DU...		Lus10010731 [exp]	5.7	0.7865
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Lus10041083 [exp]	7.7	0.8220
AT4G11090		TBL23	TRICHOME BIREFRINGENCE-LIKE 23...		Lus10032367 [exp]	11.5	0.8284
AT3G57400			unknown protein		Lus10042067 [exp]	13.0	0.8001
AT3G02870		VTC4	Inositol monophosphatase famil...		Lus10039046 [exp]	16.4	0.7587
AT4G37250			Leucine-rich repeat protein ki...		Lus10010263 [exp]	16.9	0.8148

Compare expression of checked genes

Lus10042757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.