Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37925 159 / 4e-48 NdhM, NDH-M NADH dehydrogenase-like complex M, subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029727 [exp] 268 / 1e-91 AT4G37925 172 / 6e-55 NADH dehydrogenase-like complex M, subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex (.1) Lus10029728 [exp] 267 / 9e-91 AT4G37925 244 / 1e-82 NADH dehydrogenase-like complex M, subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex (.1) Lus10042759 [exp] 167 / 1e-52 AT4G37925 207 / 3e-69 NADH dehydrogenase-like complex M, subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex (.1) Lus10029725 [exp] 155 / 1e-44 AT3G06240 74 / 3e-14 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G183000 [exp] 189 / 5e-60 AT4G37925 244 / 2e-82 NADH dehydrogenase-like complex M, subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex (.1) Potri.002G077600 [exp] 177 / 1e-55 AT4G37925 198 / 1e-64 NADH dehydrogenase-like complex M, subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10664 [flax] [poplar] NdhM Cyanobacterial and plastid NDH-1 subunit M
Representative CDS sequence Show only first row Show all	>Lus10042758 pacid=23181900 polypeptide=Lus10042758 locus=Lus10042758.g ID=Lus10042758.BGIv1.0 annot-version=v1.0 ATGAGCGAGGAAGTTTTCAAGAAGGTTGCGCTGCTGCCGGAGCCTGAACATGCTGATTTAAATCAGTCGCCTATGTACATGGTCAAGAACTCGTTGATGG CTATCTCTGGAGGCAGTATATGGAGGGTGCTGAACTACGATAAGCTTGAATGTGGATGGGAGAAATTGTTTAGCATTGGGGATGCTAGTTTTGTGAAGGA AGTCAAGGATGTTCGTGCACTAACATGGGAAGAGGGGAGATGGATTGCAGGTAGGAGCAGAGTTTCAGGAATCAAAGGCAAAGCATCGAATCCATTCAAC CTTACAGCAATGGCAGCTTCTTCATCTTACATTGCCTTTTCCACAGTGAGTATGCTCGGAAATCGCGGCGCAAGACAGCTCAGAAATAGGAGTGTAGTTT CAGTTTCAGCACAACCGCAAGAAGCTCAGGTCCAGGAAACACAGGAGGAGGAGAAGGACGACCAAAAACAAGAGATCACCACTCCAGCAAAGCAGTCCAC GAGACCGAGACCGGTGGAGAAACAAATAAATGTGCAAAACAAGAACTTGACCAGAGAGTATGGAGGGCAGTGGCTCAGCAGCACCACCCGCCACGTAAGG ATCTATGCTGCCTACATTGATATCGAGACTGAAACCATGGATCAAACCCAGATGGATAAGCTCACTATCATCCTTGATCCTACTGATGAGTTTCTCTGGA ACGACGAGACCACCACCAAGATCTACTCTTACTTCCAGGAACTTGTCGATAACTACGAGGGAGCTCCATTGACAGAATACACGCTGTAG
AA sequence Show only first row Show all	>Lus10042758 pacid=23181900 polypeptide=Lus10042758 locus=Lus10042758.g ID=Lus10042758.BGIv1.0 annot-version=v1.0 MSEEVFKKVALLPEPEHADLNQSPMYMVKNSLMAISGGSIWRVLNYDKLECGWEKLFSIGDASFVKEVKDVRALTWEEGRWIAGRSRVSGIKGKASNPFN LTAMAASSSYIAFSTVSMLGNRGARQLRNRSVVSVSAQPQEAQVQETQEEEKDDQKQEITTPAKQSTRPRPVEKQINVQNKNLTREYGGQWLSSTTRHVR IYAAYIDIETETMDQTQMDKLTIILDPTDEFLWNDETTTKIYSYFQELVDNYEGAPLTEYTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37925		NdhM, NDH-M	NADH dehydrogenase-like comple...		Lus10042758 [exp]	0	1
AT2G01755			unknown protein		Lus10005230 [exp]	2.6	0.9393
AT3G59780			Rhodanese/Cell cycle control p...		Lus10025587 [exp]	4.2	0.9381
AT4G30845			unknown protein		Lus10026098 [exp]	4.5	0.9215
AT4G15510			Photosystem II reaction center...		Lus10000614 [exp]	7.3	0.9291
AT2G05310			unknown protein		Lus10001175 [exp]	9.5	0.9158
AT1G08980		ATTOC64-I, ATAM...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10029941 [exp]	12.7	0.9146
AT4G15510			Photosystem II reaction center...		Lus10000352 [exp]	13.5	0.9059
AT1G49975			unknown protein		Lus10033771 [exp]	14.9	0.9157
AT4G02530			chloroplast thylakoid lumen pr...		Lus10030109 [exp]	15.2	0.9149
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Lus10000221 [exp]	18.3	0.9148

Compare expression of checked genes

Lus10042758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.