Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77270 57 / 4e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029729 [exp] 247 / 1e-78 AT1G77270 73 / 4e-13 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G077500 [exp] 54 / 3e-09 AT1G21560 98 / 4e-22 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042760 pacid=23181907 polypeptide=Lus10042760 locus=Lus10042760.g ID=Lus10042760.BGIv1.0 annot-version=v1.0 ATGACCGATTTCGAGTTCAATTCGAATTTGATAAACCAAATTGAATTGCAAATCAAAATCGACGATCTTGATGCTGAACCTGAACGCCCTATTCGGGATT TTGATTCCGAGTTCAGTGTAAAGCTCATTGCACTTCTTAGAAAGCCGTTCAACAAGAAGGAGTATGATGATCTGATGGAAGAAGTATATGCGAAGAAGCA GAAGACTAAAGAACAGTTGCTCCGGGGAAGGTCAAAGATGGTCAAAGTGAAAGGTGTTTTTGACAAATCTTATATTGAGCAGCATGAGGATTTTGCCACC GTGTTCGAAGGCCTGAAGACTAAACTCGAAAGCAATCACCCTGTGAGGCTGAATCTATTGCGTGGATTTTGCTATTGGTTGGGGGTCAGTGTCTTTTCTT GCTCTCAACTCCTGTCTTATGCTTGCCAAAGCTAA
AA sequence Show only first row Show all	>Lus10042760 pacid=23181907 polypeptide=Lus10042760 locus=Lus10042760.g ID=Lus10042760.BGIv1.0 annot-version=v1.0 MTDFEFNSNLINQIELQIKIDDLDAEPERPIRDFDSEFSVKLIALLRKPFNKKEYDDLMEEVYAKKQKTKEQLLRGRSKMVKVKGVFDKSYIEQHEDFAT VFEGLKTKLESNHPVRLNLLRGFCYWLGVSVFSCSQLLSYACQS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77270			unknown protein		Lus10042760 [exp]	0	1
AT3G49170		EMB2261	embryo defective 2261, Tetratr...		Lus10004253 [exp]	2.6	0.8496
AT1G78590		NADK3, ATNADK-3	ARABIDOPSIS THALIANA NADH KINA...		Lus10000204 [exp]	4.6	0.7936
AT4G18593			dual specificity protein phosp...		Lus10013914 [exp]	6.6	0.8047
AT5G58610			PHD finger transcription facto...		Lus10003352 [exp]	7.9	0.7900
AT1G34360			translation initiation factor ...		Lus10024699 [exp]	15.9	0.8049
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Lus10025355 [exp]	17.7	0.8022
AT4G02210			unknown protein		Lus10013421 [exp]	18.8	0.7918
AT4G39790			Protein of unknown function (D...		Lus10024039 [exp]	21.1	0.8171
					Lus10037427 [exp]	23.7	0.7328
AT1G34770			unknown protein		Lus10020925 [exp]	24.5	0.7782

Compare expression of checked genes

Lus10042760 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.