Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21550 59 / 1e-11 Calcium-binding EF-hand family protein (.1) AT4G20780 40 / 0.0002 CML42 calmodulin like 42 (.1) AT5G37770 39 / 0.0005 CML24, TCH2 TOUCH 2, CALMODULIN-LIKE 24, EF hand calcium-binding protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029730 [exp] 115 / 3e-34 AT1G21550 68 / 8e-16 Calcium-binding EF-hand family protein (.1) Lus10040888 [exp] 104 / 3e-30 AT1G21550 54 / 8e-11 Calcium-binding EF-hand family protein (.1) Lus10000972 [exp] 92 / 5e-24 AT1G21550 128 / 3e-38 Calcium-binding EF-hand family protein (.1) Lus10028657 [exp] 87 / 5e-22 AT1G21550 122 / 9e-36 Calcium-binding EF-hand family protein (.1) Lus10042762 [exp] 45 / 8e-06 AT1G77260 741 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G077300 [exp] 77 / 1e-18 AT1G21550 123 / 3e-36 Calcium-binding EF-hand family protein (.1) Potri.005G183300 [exp] 76 / 8e-18 AT1G21550 136 / 1e-41 Calcium-binding EF-hand family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042761 pacid=23181799 polypeptide=Lus10042761 locus=Lus10042761.g ID=Lus10042761.BGIv1.0 annot-version=v1.0 ATGTCCTCCGTCCACGGCGGACTCCACGCCAACGACTTGCGGCGGATCTTCCACCAGCTGGACCGGAACGGGGACGGCATTCTCAGCGTCGACGAGCTGA GCTGGCTTCTCGAGCGAATCGGAGCAAGCAGCAGCCACTTCACGATCGACGAGCTGGAGGCTTCCGTAGGGAAATCCACGCTCGAATTCGCAGAGTTCTG CTTCCGTAGGGAAATCCACGCTCGATTTCGACGAGTTCTTGGAATTCTACCGCTCAATTTCCGGTGGCGGCGGAGGAGAAAAGGATTTGGAAGAGGCGTT CAGGGTGTTCGACTTGAACGGCGACGGATTCATAACGAGCGAGGAGCTCCAGAAGGTGCTGTCGAGGCTGGGGCTGTGGGACGACAGGAAGGACAGCCGG AGGATGATTCGTTTCTACGACACGAATATGGACGGTGTTCTTGA
AA sequence Show only first row Show all	>Lus10042761 pacid=23181799 polypeptide=Lus10042761 locus=Lus10042761.g ID=Lus10042761.BGIv1.0 annot-version=v1.0 MSSVHGGLHANDLRRIFHQLDRNGDGILSVDELSWLLERIGASSSHFTIDELEASVGKSTLEFAEFCFRREIHARFRRVLGILPLNFRWRRRRKGFGRGV QGVRLERRRIHNERGAPEGAVEAGAVGRQEGQPEDDSFLRHEYGRCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21550			Calcium-binding EF-hand family...		Lus10042761 [exp]	0	1
AT5G61310			Cytochrome c oxidase subunit V...		Lus10040012 [exp]	4.0	0.7466
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10041518 [exp]	4.7	0.7122
AT4G10270			Wound-responsive family protei...		Lus10033729 [exp]	8.7	0.7372
AT5G39670			Calcium-binding EF-hand family...		Lus10026301 [exp]	11.2	0.7845
AT3G26980		MUB4	membrane-anchored ubiquitin-fo...		Lus10032014 [exp]	13.9	0.7184
AT1G25480			Aluminium activated malate tra...		Lus10035037 [exp]	14.1	0.7552
AT2G01520		ZCE1, MLP328	\(Zusammen-CA\)-enhanced 1, ML...		Lus10028887 [exp]	15.6	0.7678
					Lus10040164 [exp]	19.3	0.6832
AT3G18420			Protein prenylyltransferase su...		Lus10035087 [exp]	28.9	0.7339
AT5G62440			Protein of unknown function (D...		Lus10024968 [exp]	32.6	0.7166

Compare expression of checked genes

Lus10042761 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.