Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77260 691 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G39750 666 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 659 / 0 Putative methyltransferase family protein (.1) AT4G14360 398 / 1e-128 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G23300 394 / 5e-127 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G04430 387 / 2e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G34300 383 / 5e-121 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G51070 379 / 3e-118 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G29470 375 / 3e-118 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G40280 370 / 3e-118 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029731 [exp] 1075 / 0 AT1G77260 732 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028656 [exp] 813 / 0 AT1G77260 744 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10000973 [exp] 699 / 0 AT1G77260 652 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030155 [exp] 664 / 0 AT2G39750 1049 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004702 [exp] 664 / 0 AT2G39750 1021 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10001013 [exp] 655 / 0 AT2G39750 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10040268 [exp] 624 / 0 AT2G39750 967 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018954 [exp] 389 / 5e-123 AT1G29470 1047 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10028650 [exp] 384 / 4e-121 AT1G29470 1036 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G077100 [exp] 763 / 0 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G059500 [exp] 663 / 0 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G199300 [exp] 633 / 0 AT2G39750 998 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G184500 [exp] 387 / 8e-122 AT1G29470 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G075800 [exp] 385 / 3e-121 AT1G29470 1048 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.010G185000 [exp] 379 / 5e-121 AT2G40280 810 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G036800 [exp] 375 / 1e-119 AT1G04430 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G118100 [exp] 381 / 2e-118 AT3G51070 990 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G226000 [exp] 370 / 5e-118 AT1G04430 939 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G342300 [exp] 365 / 6e-116 AT5G14430 893 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10042762 pacid=23181661 polypeptide=Lus10042762 locus=Lus10042762.g ID=Lus10042762.BGIv1.0 annot-version=v1.0 ATGCCTCCTCGCGGCTCAAACGAGTTAACCGAAACGTTTCGCGGGCTAGATCGGGATGGGGACGGGTTGGTGAGCCTGGAGTGCCTCCGGAGCCAGCTAC TACAAAGCAGCGGAGCGTCCATCACCAAAGATGAGCTTGCTTCCTTGATTGGGAAGTCGTCTCTCGACGTTCAGGAGTTCACTTTGTTGTACAACTCCAT TGAGATCCAGAACGACGTCGAATTTGTTGATGTCGCCTGTGACGAAGACGAGGAAGGTTGTGTGATGAAGGCGTTTAAGGTGTTTGATGTCGACGGCGAT GGGTTCATCTCCGTGGAGGAGCTGGAGATTGTGTTGAAGAGGCTTGGGATATGGAAGGATGACCGAAATATAAGTGGTGGGAAGGAGAAGGACCCGACTG CAATGATTTGTAAGTTCGATAAGAATTTTGATGGGTTGCTCGATTTCGAGGAGTTTAAGACTATGCACTATTCTGTCACTGTATCACCACACTCTCCCCC TACCGCCGCCGCTATGAAACCCACCACGTCCGCTGCTGCCGCCGTTGGCACAGCTGTAGACATCGTCAAAACCCCCAATTTCGTTAAAATTGCCGTCATC TCTCTCCTCTCCCTCTCTATCCTCCTCCTCTTCTACCACCACAACCCTTCCTTCCCCTCCGCTTTCTCCACCTTCTCCTCCTCCCCTTCCACCGCCGCCA AATCCACTTCAACCGCCGTCAATTCCTCCTCAGCCCCCTCCAACTCCTCCTCAACTATAACCAAGGTGAAGAAACTGCCTCCTCCTTCTCCTCCTCCGCC GCCACCTCAACCTGTCGCGAAGCGGACGGGCATCGTGGACGATAACGGCGTTATGACGGACGATTTCGAAGTCGGAGAGTTTGATCCAAGCGAGATGGAG GATGCTGATAGTCCCAGGGCAGGAGCAGAGGAACCAGAGGAACCGAGACGCAAGTACGCCAAATTCCAAACGTGTGAGGAGAGCAAGATCGATTACATTC CTTGTTTGGACAAGTCTGAAAGAAAATGCCCTAATTCAAGGTTGGATTGCGTCGTCCCTATGCCTAGCGGCTACCAGAAATCCATCCCTTGGCCCAGGAG CCGCGACGAGGTTTTGCTTCATAACATACCTGATACACGTCTGGTTCAAGATCAAGGTAGCTGGTATTCAATGTATGTTAAAGATGATAAGCTAGCTTTC CATGATGGTGGCGCAAATTCGGATTTCGTCAATGGAGTTGATCAATATCTAAACTGGATTTCACAGATGGTTCCTGACATTGATTTTGGTCGTGGAACAC GAGTTGCCTTAGACTTTGGTTCTGGGATTGGGAGCTTTGCTGCGTCTTTGTTTCGGCGCAATGTTACAACTCTTTCAATTGGACCAAATGATGTTCATAA GAACCACATTCAGTTTGTATTAGAGCGAGGCCTTCCAGCTATGGTAGCGATATTTGGTACTCGCAGGTTGCCATATTCAAGCCAAGCTTTTGACTTGATA CATTGTTCCGGATCCGGAATCGATTGGACTGTTGATAATGGTGTTTTGCTTCTCGAGGCGAACAGACTGTTGAGAGCAGGGCGATACTTTGTGTTGCGAG CACCAAAAGATAATAACCAATGGAAAGAAATTGAGGATCTTACTAGGCGCATATGTTGGAAACTTGTCAAGAAGGAAGGTGATGTTACAATCTGGCGTAA GCCATTGAACAACAGCTGCTATCTTAGTAGGGAGATCGGAGCACAACCACCACTTTGTAGTTCCTACGAGGATCCAGATAATGTTTGGTATTTCAATGTG ACCGAATGCATTACTCCTTTACCAGAGGAAGGATACGGCTCAAATGTTACCTTGTGGCCGGCGCGACTTCACTATCCTCCAGACCGACTCCAGAGTATCA GACTAGAAGCATCTATATCTAGAAAGGAGCTGCTGAGAGCAGAATCAAAATACTGGTATGAAATAATAAGCAGTTATGTTAGAGCTTTCCATTGGAAAGA ACAGAACTTCCGGAATGTCATAGATATGAAGGCTGGATTTGGAGGGTTTGCAGCCGCATTGCATGACTTAGAACTTGCTTCTTGGGTCATGAATGTTGTT CCAGTCAGCGGCTTCAACACCTTACCTGTTATTTATGACCGCGGACTGATCGGAGTTATGCATGACTGGTGCGAGCCGTTTGACACTTACCCCAGATCGT ATGACCTCGTGCACGCAGCAGGCTTACTCTCCGATGAGAAGAGAAGGAAAAAGTGTGAGTTGTCAACGATCTTGTTAGAGATGGACAGGATGCTAAGACC CGGTGGAACCGCTTATATTCGAGACAGCTTAGCAGTTGTCCTCGAAATCCATGAGATAGCTAATGCATTGGGATGGGTGGTCAGGGTTCACGACACTGGC GAAGGACCTCATTCGAGCTGGAGATTTCTAGTGTGCGAGAAACGTATGCCCTGA
AA sequence Show only first row Show all	>Lus10042762 pacid=23181661 polypeptide=Lus10042762 locus=Lus10042762.g ID=Lus10042762.BGIv1.0 annot-version=v1.0 MPPRGSNELTETFRGLDRDGDGLVSLECLRSQLLQSSGASITKDELASLIGKSSLDVQEFTLLYNSIEIQNDVEFVDVACDEDEEGCVMKAFKVFDVDGD GFISVEELEIVLKRLGIWKDDRNISGGKEKDPTAMICKFDKNFDGLLDFEEFKTMHYSVTVSPHSPPTAAAMKPTTSAAAAVGTAVDIVKTPNFVKIAVI SLLSLSILLLFYHHNPSFPSAFSTFSSSPSTAAKSTSTAVNSSSAPSNSSSTITKVKKLPPPSPPPPPPQPVAKRTGIVDDNGVMTDDFEVGEFDPSEME DADSPRAGAEEPEEPRRKYAKFQTCEESKIDYIPCLDKSERKCPNSRLDCVVPMPSGYQKSIPWPRSRDEVLLHNIPDTRLVQDQGSWYSMYVKDDKLAF HDGGANSDFVNGVDQYLNWISQMVPDIDFGRGTRVALDFGSGIGSFAASLFRRNVTTLSIGPNDVHKNHIQFVLERGLPAMVAIFGTRRLPYSSQAFDLI HCSGSGIDWTVDNGVLLLEANRLLRAGRYFVLRAPKDNNQWKEIEDLTRRICWKLVKKEGDVTIWRKPLNNSCYLSREIGAQPPLCSSYEDPDNVWYFNV TECITPLPEEGYGSNVTLWPARLHYPPDRLQSIRLEASISRKELLRAESKYWYEIISSYVRAFHWKEQNFRNVIDMKAGFGGFAAALHDLELASWVMNVV PVSGFNTLPVIYDRGLIGVMHDWCEPFDTYPRSYDLVHAAGLLSDEKRRKKCELSTILLEMDRMLRPGGTAYIRDSLAVVLEIHEIANALGWVVRVHDTG EGPHSSWRFLVCEKRMP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77260			S-adenosyl-L-methionine-depend...		Lus10042762 [exp]	0	1
AT3G04590	AT-hook		AT hook motif DNA-binding fami...		Lus10006572 [exp]	2.8	0.8063
AT5G62070		IQD23	IQ-domain 23 (.1)		Lus10027435 [exp]	3.6	0.7191
AT1G68190	CO		B-box zinc finger family prote...		Lus10035257 [exp]	4.9	0.7392
AT5G60250			zinc finger (C3HC4-type RING f...		Lus10036128 [exp]	6.2	0.7102
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Lus10007459 [exp]	6.3	0.7365
AT1G61140		EDA16	embryo sac development arrest ...		Lus10018465 [exp]	7.5	0.7296
					Lus10013898 [exp]	11.1	0.7883
					Lus10026470 [exp]	13.0	0.6794
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Lus10032465 [exp]	14.2	0.7419
					Lus10006886 [exp]	15.0	0.7132

Compare expression of checked genes

Lus10042762 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.