Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77250 295 / 3e-93 RING/FYVE/PHD-type zinc finger family protein (.1) AT3G01460 71 / 1e-12 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1) AT3G08020 62 / 7e-10 PHD finger family protein (.1) AT5G24330 56 / 2e-08 SDG34, ATXR6 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) AT4G29940 49 / 8e-06 HD PRHA pathogenesis related homeodomain protein A (.1.2) AT3G52100 48 / 2e-05 RING/FYVE/PHD-type zinc finger family protein (.1) AT2G36720 48 / 2e-05 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT5G09790 47 / 2e-05 PDE336, SDG15, ATXR5 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) AT3G14740 47 / 2e-05 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G44800 47 / 3e-05 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029733 [exp] 1075 / 0 AT1G77250 313 / 5e-100 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10028655 [exp] 527 / 0 AT1G77250 259 / 1e-79 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10000973 [exp] 505 / 1e-167 AT1G77260 652 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10008796 [exp] 71 / 2e-12 AT3G01460 1574 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10030625 [exp] 69 / 6e-12 AT3G01460 706 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10030864 [exp] 67 / 5e-11 AT3G01460 511 / 2e-152 methyl-CPG-binding domain 9 (.1) Lus10016404 [exp] 59 / 1e-08 AT3G08020 569 / 0.0 PHD finger family protein (.1) Lus10019715 [exp] 58 / 2e-08 AT3G08020 726 / 0.0 PHD finger family protein (.1) Lus10008495 [exp] 57 / 3e-08 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G183700 [exp] 461 / 2e-156 AT1G77250 315 / 2e-100 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.002G076900 [exp] 456 / 8e-155 AT1G77250 332 / 3e-107 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.017G072460 [exp] 71 / 2e-12 AT3G01460 929 / 0.0 methyl-CPG-binding domain 9 (.1) Potri.009G059700 [exp] 62 / 8e-10 AT3G08020 748 / 0.0 PHD finger family protein (.1) Potri.009G059500 [exp] 62 / 8e-10 AT3G08020 763 / 0.0 PHD finger family protein (.1) Potri.001G264800 [exp] 58 / 2e-08 AT3G08020 701 / 0.0 PHD finger family protein (.1) Potri.001G358900 [exp] 56 / 5e-08 AT1G50620 314 / 8e-97 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.003G126600 [exp] 56 / 8e-08 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.012G018300 [exp] 52 / 5e-07 AT5G24330 480 / 3e-171 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.015G009632 [exp] 52 / 5e-07 AT5G24330 483 / 1e-172 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Lus10042764 pacid=23181961 polypeptide=Lus10042764 locus=Lus10042764.g ID=Lus10042764.BGIv1.0 annot-version=v1.0 ATGGGTGCCGAAGAGGGAATGAGCTCTGGGCCTGGCATGGATGGTAGAGGGAAATGCTTGAAGGGTGAAGTGATTAATGGGTTTGGGAATAACAATCGTG ATGGGGTTTTGGTGTCTGGTGATGGACTTCGTACTTACAAGAGAAGGAAGCAGACAACATCTAGTTCTGACAGCAAAGATGTAGGGAATGGTAGTGTTTC AGGAGAACCTGCTGGCAAATTAGCAGACCAGGAGGAGACTCTGCGTAGACCCCAGGACTATCCTACTAGTGGTGAAGCTGGTTTAACTGATTCCAATGAT GTTTCACAAGGCCATTGGAGAAATTATATCCTTGAGCAAATGCATCGCTCTTTAAGTGATGATGAAGGTGGTATACAGCGGTGCATCCAGGATGTGCTTA GAATGCCCCTGAAGGTGTCTGATGCTTGTGACAAAGATATGTGTAAACCTTCAAAGAAAGTGTGGTTGTCTAATGGAACTCCTCATTTGGCTAAACAGAA TGATGTTAGATCCAAAGGGGCATCTGGTGAACCAAATCACCATACCATGACTGATACGTGTCGGCTTGCATTCCATGGCATCATATCATCTGAGAAGTTC ACCTCGCTATGCAAACTACTATTTGAAAATTTCCATGAAAGTAGGGCTGATAACCTTTTCAGCCTAAGTCTTATCAATCAAAGGATGAAAGATGGAGATT ATGAGCAATCACCCGGGCTTTTCTTTCAGGATATTCAAAAGTTTTGGGAAAAACTTGAAGGCATTGGAAGTGAACTGATTTTCCTTGCTAAGAGCCTCGC TGATGTATCAAAGAGCTATAAGAAGAAGCTAGCTAAACAGGAATCTGATTCCTCTGGTAAAGCTGATCAAGCAGCAGCAGCATCGGTATGCACGTGCAAG CACTGCAGGAGGGAAGCAGATGGAAGGAATTGTTTAGTCTGCGATTCTTGTGAAGATATGTACCATGTTTCTTGTATAGAACCTTCTATCGAAGACATTC CTCCCAAAAGTTGGTATTGTTCCAGTTGCTCGGCTAATGGGATGGGCTCTCATGAGAACTGTTTTGTATGTGAGAGGCTAAGTGCTCCCAGTACCCTAGA AGATAATGGACCTGATACTCGTACTGCTGTCTGTCAGATGAACGAGGAAAAATTCTTCTCCAGCTCCGAGGGGCCATCAGAAGAGAGCAATAAAGATCCA CAACAGCTGTTAGAAGAAGAAACGGGCACCGAAACTTCAAATGATTGTAAAATTTGTGGAAGTGACAGTGGTGGGAAGATGAAGATTTGTGAACACACTT TCTGCCATAATAAGTACCACGAGAGGTGTTTGACGACAAAGCAGCTGAGCTCGCACGGTCCCCGTTGGTACTGCCCTTCGTGTCTTTGCCGGCGTTGCCT AACTGACAAAGACGATGAGAAGATTGTTCTTTGCGACTCCTGTGACAGTGCATACCACATATACTGCATGGACCCGCCTCGTACCTCTATACCGAGAGGG AAATGGTTTTGCAGGCAATGCATGGCCAAACTTCAGAGAGTGCGCAGGGCAAGGAAGGCATATGAGAATCATACGAATGACGGCAAGATAGCATTTGAAG AAATGAACAACAAGAGGCCGAAAAGGAAGATTGAAGATGTGTTCGATGGCAAGGAAGGGATGGAGTTGCTGGTAAATGCTCTTTTTATAGAAGACAATTT GGCAGGCAAGCAGAGTCAGAGTTGA
AA sequence Show only first row Show all	>Lus10042764 pacid=23181961 polypeptide=Lus10042764 locus=Lus10042764.g ID=Lus10042764.BGIv1.0 annot-version=v1.0 MGAEEGMSSGPGMDGRGKCLKGEVINGFGNNNRDGVLVSGDGLRTYKRRKQTTSSSDSKDVGNGSVSGEPAGKLADQEETLRRPQDYPTSGEAGLTDSND VSQGHWRNYILEQMHRSLSDDEGGIQRCIQDVLRMPLKVSDACDKDMCKPSKKVWLSNGTPHLAKQNDVRSKGASGEPNHHTMTDTCRLAFHGIISSEKF TSLCKLLFENFHESRADNLFSLSLINQRMKDGDYEQSPGLFFQDIQKFWEKLEGIGSELIFLAKSLADVSKSYKKKLAKQESDSSGKADQAAAASVCTCK HCRREADGRNCLVCDSCEDMYHVSCIEPSIEDIPPKSWYCSSCSANGMGSHENCFVCERLSAPSTLEDNGPDTRTAVCQMNEEKFFSSSEGPSEESNKDP QQLLEEETGTETSNDCKICGSDSGGKMKICEHTFCHNKYHERCLTTKQLSSHGPRWYCPSCLCRRCLTDKDDEKIVLCDSCDSAYHIYCMDPPRTSIPRG KWFCRQCMAKLQRVRRARKAYENHTNDGKIAFEEMNNKRPKRKIEDVFDGKEGMELLVNALFIEDNLAGKQSQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10042764 [exp]	0	1
AT2G17020			F-box/RNI-like superfamily pro...		Lus10023988 [exp]	1.0	0.9544
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10029733 [exp]	1.4	0.9164
AT2G45620			Nucleotidyltransferase family ...		Lus10015854 [exp]	2.0	0.8910
AT5G10490		MSL2	MSCS-like 2 (.1.2.3)		Lus10002652 [exp]	2.4	0.8994
AT2G02148			unknown protein		Lus10035090 [exp]	2.8	0.8462
AT5G22730			F-box/RNI-like/FBD-like domain...		Lus10027471 [exp]	4.6	0.8529
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10040964 [exp]	4.9	0.8661
AT2G45620			Nucleotidyltransferase family ...		Lus10009309 [exp]	6.3	0.8385
AT1G32090			early-responsive to dehydratio...		Lus10002133 [exp]	6.5	0.8040
AT2G19800		MIOX2	myo-inositol oxygenase 2 (.1)		Lus10041030 [exp]	8.1	0.8829

Compare expression of checked genes

Lus10042764 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.