Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33270 532 / 0 AtCDC20.1, CDC20.1 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) AT4G33260 530 / 0 AtCDC20.2, CDC20.2 cell division cycle 20.2, Transducin family protein / WD-40 repeat family protein (.1.2) AT5G27570 490 / 1e-173 AtCDC20.5 cell division cycle 20.5, Transducin/WD40 repeat-like superfamily protein (.1) AT5G26900 473 / 2e-166 AtCDC20.4 cell division cycle 20.4, Transducin family protein / WD-40 repeat family protein (.1) AT5G27080 471 / 2e-165 AtCDC20.3 cell division cycle 20.3, Transducin family protein / WD-40 repeat family protein (.1) AT5G27945 399 / 1e-137 Transducin/WD40 repeat-like superfamily protein (.1) AT4G22910 301 / 2e-98 CCS52A1, FZR2 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) AT5G13840 298 / 2e-97 FZR3 FIZZY-related 3 (.1.2) AT4G11920 294 / 7e-96 FZR1, CCS52A2 FIZZY-RELATED 1, cell cycle switch protein 52 A2 (.1) AT5G08390 76 / 2e-14 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042748 [exp] 751 / 0 AT4G33270 592 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10034687 [exp] 617 / 0 AT4G33270 620 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10037593 [exp] 585 / 0 AT4G33270 728 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10006853 [exp] 577 / 0 AT4G33270 729 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10006851 [exp] 576 / 0 AT4G33270 728 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10037595 [exp] 327 / 2e-112 AT4G33270 402 / 2e-141 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10040282 [exp] 303 / 3e-96 AT5G13840 685 / 0.0 FIZZY-related 3 (.1.2) Lus10025838 [exp] 274 / 2e-91 AT4G33270 295 / 3e-99 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10024482 [exp] 283 / 3e-91 AT4G22910 733 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G021800 [exp] 542 / 0 AT4G33270 767 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.013G048900 [exp] 540 / 0 AT4G33270 766 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.016G118400 [exp] 535 / 0 AT4G33270 771 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.016G068700 [exp] 485 / 3e-171 AT4G33270 607 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.015G110300 [exp] 298 / 9e-98 AT4G33270 363 / 5e-122 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.010G202100 [exp] 294 / 1e-95 AT5G13840 707 / 0.0 FIZZY-related 3 (.1.2) Potri.001G112700 [exp] 289 / 1e-93 AT4G22910 705 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Potri.003G119500 [exp] 285 / 5e-92 AT4G22910 702 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Potri.008G057500 [exp] 284 / 9e-92 AT5G13840 705 / 0.0 FIZZY-related 3 (.1.2) Potri.008G002300 [exp] 76 / 9e-15 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10042765 pacid=23181897 polypeptide=Lus10042765 locus=Lus10042765.g ID=Lus10042765.BGIv1.0 annot-version=v1.0 ATGGGCTTGAATCGTACTAGGATTTTCGCGTTCAAGAACAAGCTTCCCACTCCTGTTGAGTTGATTCCGCATCAGCATACCTGTTCAGATTCTTCTCTTC CTCCCCAGCCAAAACCAGCCAAGCCTCGCAGACACATTCCTCAGACTCCAGAGAGCAAATTGGACGCTCCAGACATTGTGGATGATTTTTACTTCAACGT ACTGGACTGGAGCATCAATAATGTTCTGGCGATTGCACTAGGCTGTACAGTTTATCTGTGGGATGCTTCAAACGGCTCTACTTACGAGCTTGTCACCGTT GATGAAGAGCTTGGCCCTGTTAGGAGCGTTAAATGGGCTCCTGATGGCTGCCATCTCGCCCTCGGTTTGAGCAACTCCCAAGTCCAATTGTGGGATTCTA TTTGTAACAAACTGGTACAAACATTGAAAGGCGGCCACAGAAGCCTAGTTGGTTCAATGGATTGGAACAGACACATCTTGACCACTGGAGGAATGGACGG AAGGATCCTAAACACCGATATCAGAACCACGGAACACGTTGTAATGGAATTCCGGGGCCACACACAAGAAGTCTGCGGACTGAAATGGTCGGATTCCGGT CAACAATTAGCCAGTGGAGGCAACGACAATCTCATCCACATCTGGGACATATCCATGGCTGCTGCTACTTCTTCTTCCAACCCCCAACGGACTCCGTATC TCCACAGGCTTGAGAACCATACCTCAGCAGTAAAGGCTCTAGCTTGGTGTCCATTCCAACGAAACTTGCTTGCTACAGGAGGCGGCGAAGAAGACAAGAC GATCAAGTTCTGGAACACCACTACGGGTGCGTGCTTGAACTCGGTGAACACGGGCTCTCCGGTTTGTGCATTGCTGTGGAACAAGAACGAGAGGGAACTC TTAACCTCTCATGGGTTCCCCGGGAATCAGCTTACCTTGTGGAAGTATCCATCCATGTTGAAGATCGCAGAGCGTACTGGCCATACTTCCAGTGTCCTGT TCATGGCTCAGAGTCCAGATGGATGCACGGTGGCATCCGCTGCAGGGGATCAAACTCTGAGGGTCTGGTACATGTTTGGGGATCCTAAAGCTGCTGCTGC AAAGAAGAAGAAAGCGAATCCGGACTCTTGGGTGAATCGCAGCCGGTGCACCATCCGGTGA
AA sequence Show only first row Show all	>Lus10042765 pacid=23181897 polypeptide=Lus10042765 locus=Lus10042765.g ID=Lus10042765.BGIv1.0 annot-version=v1.0 MGLNRTRIFAFKNKLPTPVELIPHQHTCSDSSLPPQPKPAKPRRHIPQTPESKLDAPDIVDDFYFNVLDWSINNVLAIALGCTVYLWDASNGSTYELVTV DEELGPVRSVKWAPDGCHLALGLSNSQVQLWDSICNKLVQTLKGGHRSLVGSMDWNRHILTTGGMDGRILNTDIRTTEHVVMEFRGHTQEVCGLKWSDSG QQLASGGNDNLIHIWDISMAAATSSSNPQRTPYLHRLENHTSAVKALAWCPFQRNLLATGGGEEDKTIKFWNTTTGACLNSVNTGSPVCALLWNKNEREL LTSHGFPGNQLTLWKYPSMLKIAERTGHTSSVLFMAQSPDGCTVASAAGDQTLRVWYMFGDPKAAAAKKKKANPDSWVNRSRCTIR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10042765 [exp]	0	1
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Lus10008208 [exp]	4.5	0.8915
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Lus10033289 [exp]	12.1	0.8559
AT1G65090			unknown protein		Lus10020377 [exp]	23.9	0.8901
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Lus10005279 [exp]	25.3	0.8669
AT1G17260		AHA10	autoinhibited H\(+\)-ATPase is...		Lus10037466 [exp]	25.6	0.8868
AT5G18030			SAUR-like auxin-responsive pro...		Lus10027317 [exp]	32.4	0.8698
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Lus10019086 [exp]	36.1	0.8858
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10036782 [exp]	39.9	0.8765
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10002421 [exp]	40.8	0.8820
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10028893 [exp]	41.6	0.8831

Compare expression of checked genes

Lus10042765 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.