Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21380 466 / 5e-161 Target of Myb protein 1 (.1) AT1G76970 433 / 7e-149 Target of Myb protein 1 (.1) AT4G32760 318 / 4e-101 ENTH/VHS/GAT family protein (.1.2) AT3G08790 288 / 1e-90 ENTH/VHS/GAT family protein (.1) AT2G38410 240 / 2e-71 ENTH/VHS/GAT family protein (.1) AT5G01760 213 / 2e-62 ENTH/VHS/GAT family protein (.1) AT5G63640 196 / 4e-57 ENTH/VHS/GAT family protein (.1) AT5G16880 119 / 2e-29 Target of Myb protein 1 (.1.2.3) AT1G06210 81 / 3e-16 ENTH/VHS/GAT family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029739 [exp] 805 / 0 AT1G21380 518 / 0.0 Target of Myb protein 1 (.1) Lus10028649 [exp] 472 / 9e-160 AT1G21380 452 / 7e-152 Target of Myb protein 1 (.1) Lus10018948 [exp] 458 / 5e-159 AT1G21380 439 / 1e-151 Target of Myb protein 1 (.1) Lus10022140 [exp] 334 / 8e-107 AT4G32760 637 / 0.0 ENTH/VHS/GAT family protein (.1.2) Lus10025264 [exp] 268 / 1e-81 AT2G38410 406 / 1e-132 ENTH/VHS/GAT family protein (.1) Lus10014155 [exp] 265 / 2e-81 AT5G01760 439 / 5e-146 ENTH/VHS/GAT family protein (.1) Lus10022753 [exp] 264 / 6e-81 AT5G01760 434 / 3e-144 ENTH/VHS/GAT family protein (.1) Lus10011689 [exp] 208 / 1e-59 AT3G08790 461 / 5e-154 ENTH/VHS/GAT family protein (.1) Lus10022667 [exp] 190 / 1e-54 AT5G63640 450 / 1e-156 ENTH/VHS/GAT family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G075500 [exp] 572 / 0 AT1G21380 471 / 2e-162 Target of Myb protein 1 (.1) Potri.005G184900 [exp] 570 / 0 AT1G21380 473 / 2e-163 Target of Myb protein 1 (.1) Potri.018G039100 [exp] 347 / 3e-112 AT4G32760 561 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.006G241000 [exp] 340 / 8e-110 AT4G32760 630 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.016G131900 [exp] 282 / 5e-87 AT2G38410 406 / 2e-132 ENTH/VHS/GAT family protein (.1) Potri.006G106500 [exp] 269 / 1e-82 AT2G38410 407 / 2e-133 ENTH/VHS/GAT family protein (.1) Potri.T010700 [exp] 197 / 1e-57 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.T005401 [exp] 197 / 1e-57 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.004G138600 [exp] 191 / 2e-55 AT5G63640 447 / 1e-155 ENTH/VHS/GAT family protein (.1) Potri.013G082500 [exp] 126 / 7e-32 AT5G16880 553 / 0.0 Target of Myb protein 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03127 [flax] [poplar] GAT GAT domain CL0009 [flax] [poplar] ENTH_VHS PF00790 [flax] [poplar] VHS VHS domain
Representative CDS sequence Show only first row Show all	>Lus10042770 pacid=23181738 polypeptide=Lus10042770 locus=Lus10042770.g ID=Lus10042770.BGIv1.0 annot-version=v1.0 ATGGCTAATAATAATGCGGCAGCTTGTGCCGAGAGGGCCACTAGTGATATGCTTATCGGTCCTGATTGGGCTATCAACATTGAGCTATGCGATATCATTA ACATGGATCCTAGGCAAGCAAAAGATGCTTTGAAAGTACTGAAAAAGAGGCTGGGCCACAAGAATCATGAAATACAGCTACTAGCTCTTGTCGCACTGGA GGCCCTTAGCAAAAATTGTGGTGAGAATGTGTTTCAGCAGATTGTCGAGCGAGATATCTTGCACGATATGGTTAAAATTGTGAAGAAGAAGCCAGACTTG AGTGTAAGAGAAAAGATACTTACCCTGATAGACACATGGCAAGAAGCTTTTCGGGGGGCAAGGGGGAGGTACCCTCAGTACTATGCTGCTTACAATGAGC TGAGGGCTGCTGGTATTGAATTTCCACCAAGGATAGAAAACAGTGTGCCGCTATTCACCCCTCCCCAGACACAGCCAATAGCTCACACATCTGCAACATA TGAAGATGCTGCCATTCAGGCGTCGCTCCAGGCTGATACTTCTGGCCTGAGCTTACCAGAGATTGAGAACGCGCGAGGTGTAGCTGAAGTATTGATGGAA ATGCTTGGTGCCTTGGATCCTAAGAATCGTGAGGGTGTGAAGCAAGAATTGATAGTTGACCTAGTAGACCAGTGCCGCTCCTATCTACAGAGAGTAATTC TTCTTGTGAACAACACAACGGATGAAGAACTTTTAGCACAGGGACTGACACTGAATGATAGCTTGCAGCGCGCCATCCGCGTTCATGATGATATTGCCAG CGGAACTGCTGCTCAAGTAGGGACACAAAGTGAAAGTGAACCTTCATTGGTACCACTTGTTAATGTTAACCAAGAGGATGACGACTCTGACGATGACTTC TCCCAGTTGGCTCATAGATCTTCACAAGGACAAGGCTGTAAACCAACCAGCGTCAGAACGCCAACGAACGTCGTCACACCATTCCTTCCTCCTCCGCCTT CTTCGAAGAAGCCAGTGGTCTCTGATACAGCTTCGGTTGACTACCTCAGCGGTGACTATTACAAATCCGAACCGGTTCCTTTCTCGGTTCCTGCGCAGTC CAACTCACAACCTTCCCCTCCTGAATATTCGCCTACATCGTCTCCTCCTCGCCCTCAACCTCCCATGTTCGATGGAAAGCCCGTGTTCGACGAACCACTT CCACCGAGCAGGTTTTCCGATCAGATGCCTCCGGCTCCTTGGGAAACGGCCTCAGTTGTGGACCTTCCTCCGCCGCCTTCTAAGCATAATCAGAGACAGC AATTCTTTGATCAGGCTAGTGTTCCTCATGGTGGAAGTAGCAGTTCTGGCTCCTCGTATGATGGCTTAGTTGGACAAACTCCGAACATGTCTATTGGTTT GTCCACCCTGAAAAAGGACTCGAAACCGGAGGATGTCCTGTTTAAGGATCTTGTGGATTTCGCGAAAGTCAAGTCAACCAAACCTCCCGGCAGCAGACCG TTGTGA
AA sequence Show only first row Show all	>Lus10042770 pacid=23181738 polypeptide=Lus10042770 locus=Lus10042770.g ID=Lus10042770.BGIv1.0 annot-version=v1.0 MANNNAAACAERATSDMLIGPDWAINIELCDIINMDPRQAKDALKVLKKRLGHKNHEIQLLALVALEALSKNCGENVFQQIVERDILHDMVKIVKKKPDL SVREKILTLIDTWQEAFRGARGRYPQYYAAYNELRAAGIEFPPRIENSVPLFTPPQTQPIAHTSATYEDAAIQASLQADTSGLSLPEIENARGVAEVLME MLGALDPKNREGVKQELIVDLVDQCRSYLQRVILLVNNTTDEELLAQGLTLNDSLQRAIRVHDDIASGTAAQVGTQSESEPSLVPLVNVNQEDDDSDDDF SQLAHRSSQGQGCKPTSVRTPTNVVTPFLPPPPSSKKPVVSDTASVDYLSGDYYKSEPVPFSVPAQSNSQPSPPEYSPTSSPPRPQPPMFDGKPVFDEPL PPSRFSDQMPPAPWETASVVDLPPPPSKHNQRQQFFDQASVPHGGSSSSGSSYDGLVGQTPNMSIGLSTLKKDSKPEDVLFKDLVDFAKVKSTKPPGSRP L

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21380			Target of Myb protein 1 (.1)		Lus10042770 [exp]	0	1
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Lus10020788 [exp]	13.9	0.8496
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10036609 [exp]	25.2	0.8416
AT5G45900		ATAPG7, ATG7, A...	AUTOPHAGY-RELATED 7, AUTOPHAGY...		Lus10025416 [exp]	28.1	0.8266
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10021245 [exp]	30.0	0.8060
AT5G54960		PDC2	pyruvate decarboxylase-2 (.1)		Lus10003384 [exp]	32.7	0.8483
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10013486 [exp]	48.9	0.8071
AT3G49590		ATG13	autophagy-related 13, Autophag...		Lus10019097 [exp]	55.5	0.7636
AT2G41640			Glycosyltransferase family 61 ...		Lus10035441 [exp]	56.7	0.8098
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10007933 [exp]	57.3	0.7718
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10002378 [exp]	66.9	0.7975

Compare expression of checked genes

Lus10042770 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.