Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09350 242 / 1e-80 NdhT, CRRJ NADH dehydrogenase-like complex T, CHLORORESPIRATORY REDUCTION J, Chaperone DnaJ-domain superfamily protein (.1) AT1G80030 62 / 5e-11 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT3G17830 58 / 1e-09 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G22360 57 / 3e-09 DNAJ heat shock family protein (.1) AT1G28210 54 / 3e-08 ATJ1 DNAJ heat shock family protein (.1.2) AT1G56300 52 / 4e-08 Chaperone DnaJ-domain superfamily protein (.1) AT3G13310 51 / 5e-08 Chaperone DnaJ-domain superfamily protein (.1) AT4G39960 52 / 9e-08 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G35720 52 / 1e-07 OWL1 ORIENTATION UNDER VERY LOW FLUENCES OF LIGHT 1, DNAJ heat shock N-terminal domain-containing protein (.1) AT3G08970 52 / 2e-07 TMS1, ATERDJ3A THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029740 [exp] 396 / 4e-141 AT4G09350 287 / 2e-98 NADH dehydrogenase-like complex T, CHLORORESPIRATORY REDUCTION J, Chaperone DnaJ-domain superfamily protein (.1) Lus10040777 [exp] 59 / 4e-10 AT5G59610 246 / 6e-81 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10016510 [exp] 59 / 5e-10 AT5G59610 252 / 2e-83 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10017263 [exp] 57 / 1e-09 AT4G36040 106 / 2e-29 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10003380 [exp] 57 / 3e-09 AT3G08970 615 / 0.0 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Lus10041906 [exp] 55 / 3e-09 AT4G36040 144 / 8e-45 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10011484 [exp] 57 / 4e-09 AT1G80030 638 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10002852 [exp] 57 / 5e-09 AT3G08970 600 / 0.0 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Lus10023122 [exp] 56 / 7e-09 AT1G80030 636 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G109000 [exp] 258 / 9e-87 AT4G09350 310 / 4e-107 NADH dehydrogenase-like complex T, CHLORORESPIRATORY REDUCTION J, Chaperone DnaJ-domain superfamily protein (.1) Potri.003G031800 [exp] 62 / 1e-10 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.010G113400 [exp] 57 / 8e-10 AT1G71000 148 / 2e-45 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G073900 [exp] 59 / 1e-09 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 57 / 3e-09 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.005G113100 [exp] 54 / 4e-09 AT2G17880 139 / 6e-43 Chaperone DnaJ-domain superfamily protein (.1) Potri.016G120000 [exp] 56 / 5e-09 AT3G08970 479 / 6e-164 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G072700 [exp] 55 / 1e-08 AT5G59610 254 / 3e-84 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.005G160200 [exp] 55 / 2e-08 AT1G28210 478 / 3e-167 DNAJ heat shock family protein (.1.2) Potri.002G020800 [exp] 53 / 2e-08 AT2G17880 110 / 3e-31 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10042771 pacid=23181978 polypeptide=Lus10042771 locus=Lus10042771.g ID=Lus10042771.BGIv1.0 annot-version=v1.0 ATGGCTTTCACAGCTGCTCCATGTCCGGCACCATTCAGAGCCAGAAACAGTGGCGGCCTCCATACTCATAGACCAATCTCCGGAACCACAACGACAGCGA AAAGATGGACTCGAACAACTCGCGGAAACAGCTATACTCGTGTTGTAGCAACTGCAGCTAAAGAGCCACAGGGACGGCAAAGGGCACCACCAGGAGTTGA CACCAGAATTCACTGGGACAACGAAGATGAAGGCTGGGTTGGAGGTACGTCATCCACTTCTTCCGACGACAAGGACATCCCACTCGGTGAATCCTTTGCT GATTTGCTCAAGGATGCTTCTGATTCTCATTACCAGTTCCTGGGTGTACAGCCGGAAGCAGACTTGGAAGAGATTAAAGCAGCATTCCGGAGGCTGTCCA AGGAGTACCATCCGGACACAACATCGCTCCCTCTTAAAACCGCTCTCGAAAAGTTTATGAGGTTGAGACAAATCTATGCTGTCCTGACCGATGTGGAGAA ACGCAAATTCTACGACTGGACACTTGCTCAGGAGGCCGCTAGCCGGCAAGCAGAGAAGATGAGAATCAAACTGGAGGACCCCAGGGACCAGGATTTCGCT AACTATGTGCCAGTTCCTGACACGGTTGATCGTCTCGGCGGGAAAAACCTGGAACTTAGTGAACAAGCCATGTCTGCTCTTACCTTTGATGCTATAGTCA TCTGTTTCGCTATCTGCTGCATAATTTACGTGGTGGTGTTCAAGGAGCCATATTACTAG
AA sequence Show only first row Show all	>Lus10042771 pacid=23181978 polypeptide=Lus10042771 locus=Lus10042771.g ID=Lus10042771.BGIv1.0 annot-version=v1.0 MAFTAAPCPAPFRARNSGGLHTHRPISGTTTTAKRWTRTTRGNSYTRVVATAAKEPQGRQRAPPGVDTRIHWDNEDEGWVGGTSSTSSDDKDIPLGESFA DLLKDASDSHYQFLGVQPEADLEEIKAAFRRLSKEYHPDTTSLPLKTALEKFMRLRQIYAVLTDVEKRKFYDWTLAQEAASRQAEKMRIKLEDPRDQDFA NYVPVPDTVDRLGGKNLELSEQAMSALTFDAIVICFAICCIIYVVVFKEPYY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Lus10042771 [exp]	0	1
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Lus10029740 [exp]	1.0	0.9809
AT5G67370			Protein of unknown function (D...		Lus10011087 [exp]	2.0	0.9590
AT4G31870		ATGPX7	glutathione peroxidase 7 (.1)		Lus10026887 [exp]	2.6	0.9468
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Lus10003323 [exp]	2.8	0.9554
AT1G79510			Uncharacterized conserved prot...		Lus10009597 [exp]	3.0	0.9581
AT1G77090			Mog1/PsbP/DUF1795-like photosy...		Lus10018931 [exp]	3.9	0.9498
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10002563 [exp]	4.2	0.9481
AT5G43860		ATCLH2	ARABIDOPSIS THALIANA CHLOROPHY...		Lus10039372 [exp]	6.0	0.9404
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10034292 [exp]	6.2	0.9358
AT2G27290			Protein of unknown function (D...		Lus10005208 [exp]	6.7	0.9323

Compare expression of checked genes

Lus10042771 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.