Plant FIBer expression Database

Lus10042772 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G71730 127 / 1e-36 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029741
[exp]
311 / 5e-109 AT1G71730 125 / 6e-37 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G198100
[exp]
144 / 3e-43 AT1G71730 114 / 2e-32 unknown protein
Potri.002G063100
[exp]
138 / 5e-41 AT1G71730 133 / 8e-40 unknown protein
PFAM info
Representative CDS sequence
>Lus10042772 pacid=23181942 polypeptide=Lus10042772 locus=Lus10042772.g ID=Lus10042772.BGIv1.0 annot-version=v1.0
ATGCCCAAATACCCACAAAACAGGCCCATGAAGCTCTCGATGGACTCAGCTCTCCATACCCCGACATCAGACTATCAGAGAGAGCGGTCTCTCGTCTTCC
GTTTCCGTATTTCACGATTTATCGTCTACTTCTTCGGCACTTCGCAGTCGCAGTCGCAGACGGGCACAGAGCTCTATCAGGCATTTTATCAAACACCTAA
AATGCATAGACGAGCACACCCTTCTCTCTGCAAATCTCTGCTCCGATTCTCCGGTAAGTCTCGGCAAACATCTCTTCCGTCTTCCCCCGATTCGATCCAA
CCGATTCATGGATTCATCAACCTCCTCCCGCACACTATCCTCCGAAAATTTCACCTGGTACCTAACGCTGCCGCAGAGCATCTTCAGACTGCTCAATCAT
TTCGCCAAGGGCAGGGTGGAAGAAGAAGAGTTAGCTCGGAACCGGAGTTGGATGTGGACAGGGAAGTAGACATGATAAACCTCAAGTTTGCAGAGGCAAG
AGAAGAGCTGGAGATGGCCATGGACGCCAAAGAGACCGTCTATTTCGACGAGGAGGCTGAATGTGCGAGAGATGCGGCGAACGAGGTTCTGAGCATGTAC
GATTCGCTTCTTGGGAAGTTGCCAGAGACTAAGAAGGGAGTCGTGCAGAGGTCCATGGGTCTCAAGATGGAGCAGTTGAAGGCTGAAGTTAAACAGCTGG
AGGATTAG
AA sequence
>Lus10042772 pacid=23181942 polypeptide=Lus10042772 locus=Lus10042772.g ID=Lus10042772.BGIv1.0 annot-version=v1.0
MPKYPQNRPMKLSMDSALHTPTSDYQRERSLVFRFRISRFIVYFFGTSQSQSQTGTELYQAFYQTPKMHRRAHPSLCKSLLRFSGKSRQTSLPSSPDSIQ
PIHGFINLLPHTILRKFHLVPNAAAEHLQTAQSFRQGQGGRRRVSSEPELDVDREVDMINLKFAEAREELEMAMDAKETVYFDEEAECARDAANEVLSMY
DSLLGKLPETKKGVVQRSMGLKMEQLKAEVKQLED

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G71730 unknown protein Lus10042772
[exp]
0 1
AT1G05600 EMB3101 EMBRYO DEFECTIVE 3101, Tetratr... Lus10030200
[exp]
4.2 0.7809
AT4G05400 copper ion binding (.1.2) Lus10027072
[exp]
6.0 0.7750
AT2G27730 copper ion binding (.1) Lus10004865
[exp]
6.7 0.7451
AT5G23680 Sterile alpha motif (SAM) doma... Lus10036012
[exp]
7.5 0.7473
AT5G01650 Tautomerase/MIF superfamily pr... Lus10022681
[exp]
8.8 0.7725
AT3G05560 Ribosomal L22e protein family ... Lus10026555
[exp]
10.0 0.7602
AT4G00390 GeBP DNA-binding storekeeper protei... Lus10005506
[exp]
11.2 0.7532
AT4G32605 Mitochondrial glycoprotein fam... Lus10034136
[exp]
14.8 0.7193
AT4G17520 Hyaluronan / mRNA binding fami... Lus10000599
[exp]
15.0 0.7244
AT5G24840 tRNA (guanine-N-7) methyltrans... Lus10020164
[exp]
15.7 0.7581

Lus10042772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.