Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71740 76 / 9e-19 unknown protein AT1G49000 50 / 1e-08 unknown protein AT3G14760 45 / 1e-06 unknown protein AT3G18560 45 / 2e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029742 [exp] 173 / 6e-57 AT1G71740 82 / 5e-21 unknown protein Lus10034266 [exp] 49 / 6e-08 AT1G71740 53 / 4e-09 unknown protein Lus10041497 [exp] 49 / 6e-08 AT1G71740 51 / 2e-08 unknown protein Lus10042496 [exp] 47 / 8e-07 AT3G14760 65 / 1e-12 unknown protein Lus10038145 [exp] 43 / 1e-05 AT3G14760 70 / 1e-14 unknown protein Lus10032453 [exp] 40 / 0.0001 AT1G49000 70 / 1e-14 unknown protein Lus10042953 [exp] 39 / 0.0006 AT1G49000 67 / 8e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G198200 [exp] 78 / 1e-19 AT1G71740 112 / 5e-33 unknown protein Potri.002G062950 [exp] 58 / 8e-12 AT1G71740 84 / 5e-22 unknown protein Potri.010G130600 [exp] 53 / 2e-09 AT1G49000 77 / 2e-18 unknown protein Potri.004G088300 [exp] 46 / 3e-07 AT1G49000 50 / 4e-08 unknown protein Potri.011G103500 [exp] 46 / 6e-07 AT3G14760 121 / 6e-35 unknown protein Potri.017G128700 [exp] 45 / 1e-06 AT3G18560 48 / 3e-07 unknown protein Potri.001G382800 [exp] 44 / 4e-06 AT3G14760 109 / 3e-30 unknown protein Potri.012G059500 [exp] 43 / 6e-06 AT1G49000 111 / 1e-31 unknown protein Potri.006G226200 [exp] 39 / 0.0002 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042773 pacid=23181851 polypeptide=Lus10042773 locus=Lus10042773.g ID=Lus10042773.BGIv1.0 annot-version=v1.0 ATGATAGCCACCAATCAATTCTCCCTCACAACGTTCCAGGCTGCTATGGCTGCTATGTCCCTCCTCGCTCTGTGTGCATTCACTTTATTCCTCTGCGCTT CCCACGGCCGGAAGCTACGGCGCCACTGGGGATCCTACTGCAGCTATGGGTTCGTCCACGACCCTGTTATTGATCAGCTTGACATGAAGAATAATCCAAA CACGATGCTGCAGCTGGTGGATTCTTCTTCTGATCACGAGACGGTGTGGAAGAAGAACATTCTGATGGGTGGTAAGTGCCAGCTCCCTGACTTTTCGGGG GTCATCATCTACGACTCTGATGGCAATCATGTCCTTCCTCCTTCTAAGAAAGATCGTCCCTTGCAGCTCACCTGGAAATGA
AA sequence Show only first row Show all	>Lus10042773 pacid=23181851 polypeptide=Lus10042773 locus=Lus10042773.g ID=Lus10042773.BGIv1.0 annot-version=v1.0 MIATNQFSLTTFQAAMAAMSLLALCAFTLFLCASHGRKLRRHWGSYCSYGFVHDPVIDQLDMKNNPNTMLQLVDSSSDHETVWKKNILMGGKCQLPDFSG VIIYDSDGNHVLPPSKKDRPLQLTWK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71740			unknown protein		Lus10042773 [exp]	0	1
AT2G21100			Disease resistance-responsive ...		Lus10025064 [exp]	2.4	0.9491
AT3G24020			Disease resistance-responsive ...		Lus10023689 [exp]	2.6	0.9506
AT3G53990			Adenine nucleotide alpha hydro...		Lus10022602 [exp]	3.2	0.9505
AT5G43060			Granulin repeat cysteine prote...		Lus10027877 [exp]	4.9	0.9179
AT3G53140			O-methyltransferase family pro...		Lus10023892 [exp]	4.9	0.9418
AT3G24020			Disease resistance-responsive ...		Lus10011767 [exp]	6.3	0.9424
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Lus10013994 [exp]	6.5	0.9282
AT5G49960			unknown protein		Lus10035805 [exp]	6.5	0.9377
					Lus10025502 [exp]	6.6	0.9306
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10029409 [exp]	6.9	0.9360

Compare expression of checked genes

Lus10042773 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.